RNA id: TU14683


Basic Information

Item Value
RNA id TU14683
length 1470
lncRNA type read_through
GC content 0.41
exon number 4
gene id G12375
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21872276 ~ 21960299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTCTCATATAAGGCTTCATTACTACTgaccacatttatataaaagacacataataaaaagtataacagcATAATATTTTAGTGAAGTATATACAAAACcttaacaaacaaaaagaagagaTGCTGAGGAAATGAGGCTAGGAAGAGaacaatatgcaaatacagtattttttttttaattgctaagAAGCTACAGATGTCGTGCAGTACAGTACCTACACCAACTCTTCCCATAGGTCATGCACGTTCCCTAAACACGCTTATTCCTGTCAGGGCTTTCTGGGATAAATTGACTTCATAACACGGGCCAAAATTTTGCTATTGATGCAAGccgattttattattttaacctCAGTATGACAACCTGACAAACTCGCTGGTTCACTACTTCAATGTCAGCTGAATCTATGCCAATTTCCCAGCTTTGGATTAAAGTTTGGATTAAAAATTGAAGTTACACCAATTGTAAAAGTGCTCTGGATCCAGGGCTCATATTTAGTGTGTGCCTCAGAGTAGGGTTCTGATGTAGCATGAGATTATCCCATATATATTAGTACATGACCAGCAAAGTATTCCAGTCTTGCCATTTTTGCCCAGTCTTCCTCCTGAACAACTTCCATCCTGCAGAGTTTTAAACCCTAATGTAACACGCCGGATCTCCCCAGAATCCTCCTCTGTAACAGTGTTGACATCTGCGTATTAAACTGAGAAAGCTGATCTGCAAACTAGACTGGTGTAAAGATGAATATATCTAAGGAAATACAAAACTAAACATGGACTAAACTTCATCTCCTCAACTTGCATTCAAACATGGAACAGACATACAAAGTAACTATATTTAACATCCTACTGTATACTTATTATTAGTGGAATGTGTTTCTAATATTGCTTACATCCACATACATTTGGTCAATGTATGCGTACGTTAATGTGTAACTTAATAAGCATGTAGTCTAAAGGTAACATGGATAATAAATGTGGCACGTGCTGGATTTTGTCAAGCCTTAACAGGGCTAGTCAGGGAAGTCGGGGAACACAAAAGATGACATTactgcttttgttgttttttactttcactctcTGATGTAAACTCTTGTGCACACGACGTCATCTGCAGTCattgtCAGGATCAGTTCTCCATCATTGGTCATTTCCCTGGTCCAGGAAGTCTTAGGGCCGTCTCCTTTCTGTAGAGTTTGCTCACAGCTGATCTTACTGTCTGTCTCCCAGCGAGGAAAGCTcGTGCAAGGCCGTCCGTCCACTGTGGTCTCCATAAACTCCTGTCCCACAGTGAAGGTCACATGGGTGGTCCTAACTGAGGTGGAGGTCTTGATTGACAGCGTCTCACCGTCCTGTGAAATCTCCACTGATGGTTTTGATGCTGCTGCTACAGCAATCTTCCGAAGCATCACGTTCACACctgagaacaaacacagagagagagagagagagagagagagagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14681 lncRNA downstream 13436 21857615 ~ 21858840 (-) True G12373
TU14218 lncRNA downstream 337077 21493358 ~ 21535199 (-) False G11974
TU14217 lncRNA downstream 337077 21534410 ~ 21535199 (-) True G11974
TU14201 lncRNA downstream 348561 21512459 ~ 21523715 (-) False G11961
TU14216 lncRNA downstream 379067 21487710 ~ 21493209 (-) True G11973
TU14840 lncRNA upstream 372826 22333125 ~ 22334604 (-) True G12498
TU14995 lncRNA upstream 727921 22688220 ~ 22689214 (-) False aicda
TU14997 lncRNA upstream 729677 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 730672 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 730989 22691288 ~ 22691526 (-) True G12642
XM_026939611.2 mRNA downstream 100569 21748221 ~ 21771707 (-) True mtbp
XM_026940137.2 mRNA downstream 357921 21509640 ~ 21514355 (-) True mrps2
XM_026940092.2 mRNA downstream 393043 21455371 ~ 21479233 (-) True setd2
XM_026939965.2 mRNA downstream 499582 21361624 ~ 21372694 (-) True ccdc12
XM_034305781.1 mRNA downstream 597719 21263577 ~ 21274557 (-) False rxrbb
XM_026939809.2 mRNA upstream 47936 22008235 ~ 22019237 (-) False polr3c
XM_026939808.2 mRNA upstream 47936 22008235 ~ 22019237 (-) True polr3c
XM_026939691.2 mRNA upstream 72169 22032468 ~ 22038626 (-) False gba
XM_026939690.2 mRNA upstream 72169 22032468 ~ 22038626 (-) True gba
XM_026939693.2 mRNA upstream 80836 22041135 ~ 22045666 (-) True dap3
XR_004578404.1 other downstream 596935 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2048593 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2125393 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2126336 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2169116 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 941052 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 941052 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2275993 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2431231 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2575561 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile