RNA id: XM_034304251.1


Basic Information

Item Value
RNA id XM_034304251.1
length 918
RNA type mRNA
GC content 0.44
exon number 3
gene id aicda
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22686407 ~ 22691804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATGCAGCTGCAGGAGGAAAAGCGATTGCTAGGATAAAGTCAGTGCAATGCTATTAACCCTCAATTTTCTTTGCTAGTTTGAAACAAAATGGTATCTCCATCACATGACTGCACTCATACCTgggcacatacagtacatctgcCATCAAAACAATCCTCATGTATAGATTTGGGGATTTGTCTATTTAGATTCTTCTAATAACAATGATGAGGACCATAAATAATGCATATCAtccttttttcctcccctcAGCTTCTTTCCTGACCTATCTTGGGGTACTATGCCCAGGTTTCTTGGGTTCCGGTGTGGATGGTATCAGGGTGGCATATGCCATCACCTGGTTCTGTTCCTGGTCACCTTGTTCAAATTGTGCCCATCGCCTTTCTCGCTTCATGTCTCAGATGCCCAACCTGCGGCTGCGCATCTTTGTCTCACGCCTCTACTTCTGTGACCGGGAGGACAGTCAAGAGAGGGAGGGACTCCGGTGCTTGCAGAGGGCGGGTGTGCAAGTGACTGTCATGACCTATAAAGATTATTTCTACTGTTGGCAAACCTTTGTGGCTCGTAAAGAAAGGGCTTTTAAGGCTTGGGACGGCCTTCACCAGAACTCTATCAGACTGTCCCGGAAACTACAGCGAATCCTGCAGCCTAGTGAGTCTGAAGACCTGAGGGATGGCTTCGCTCTGCTGGGCCTTTGACGACATTAGAGTTTACATGACAATAAATTATGGTGCTGTGAAAACAAAATTCCTGAGACTTGAATCACTGAAACATTAATCCTTTTTGCTCTAAATAGCATTACTATTTTGATAAAGGTGTTTGGTAGCTCTGTGTGAGTGCTACTTTTCAAAATACTACAATAAAGTGTTTTCGTGTGACGCGTGTCTACGTGATTTCATTCAGTCATAACGGATTT

Function

GO:

id name namespace
GO:0016444 somatic cell DNA recombination biological_process
GO:0009972 cytidine deamination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14840 lncRNA downstream 351803 22333125 ~ 22334604 (-) True G12498
XR_003404323.2 lncRNA downstream 748622 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA downstream 748623 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA downstream 748624 21934683 ~ 21937783 (-) False LOC113542638
TU14687 lncRNA downstream 756264 21927459 ~ 21930143 (-) True G12377
TU14997 lncRNA upstream 1727 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 2722 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 3039 22691288 ~ 22691526 (-) True G12642
TU15016 lncRNA upstream 61364 22749613 ~ 22753941 (-) False G12656
TU15017 lncRNA upstream 61364 22749613 ~ 22753941 (-) False G12656
XM_026939966.2 mRNA downstream 123 22673777 ~ 22686284 (-) True necap1
XM_026939768.2 mRNA downstream 41722 22620574 ~ 22644685 (-) True epn1
XM_026939769.2 mRNA downstream 41723 22620574 ~ 22644684 (-) False epn1
XM_026940014.2 mRNA downstream 83866 22594548 ~ 22602541 (-) True u2af2a
XM_034304233.1 mRNA downstream 97371 22582095 ~ 22589036 (-) True cacng6b
XM_026940004.2 mRNA upstream 5069 22693318 ~ 22695529 (-) True nat14
XM_026940104.2 mRNA upstream 7454 22695703 ~ 22702675 (-) True znf628
XM_026940182.2 mRNA upstream 15973 22704222 ~ 22709373 (-) True il11a
XM_026939992.2 mRNA upstream 43426 22731675 ~ 22746065 (-) True rasip1
XM_034304191.1 mRNA upstream 172016 22860265 ~ 22872115 (-) False LOC113542546
XR_004578404.1 other downstream 1411066 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2862724 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2939524 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2940467 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2983247 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 213102 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 213102 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1548043 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1703281 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1847611 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile