RNA id: TU15196


Basic Information

Item Value
RNA id TU15196
length 1820
RNA type TUCP
GC content 0.41
exon number 5
gene id zgc:92606
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22901351 ~ 22908140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacatttaaaaaaaaaaaaaaaaagaaactaaaaattTCGAAAAGAATTGGAGTTGTACATTTCAGGATCCTGATATCTTTGTTTTGTTAAAGCCGTAACGGAAGGTTTTAGCTGAATCCCtctgctgaggaaaaaaaaagATGAGTAGCCAGTACCAGCGCTGCGTTCCGTTCGAGGCCAGGAGattggagggagagagagttcGTGCCAAGCATCCGGACAAAATTCCGGTCATTGTAGAGAGAGCCGCGAGATCACGTGCCCCTGAACTTGACAAAAAGAAATACCTCGTTCCCTCAGAcctgacagTTGGCCAGCTGTGCTTCCTGATCAGACAGCGAGTATGCATAAGGCCAGAAGAAGctctcttcttttttgttaaaaattccctccctccttccagCTCCCCGCTTTCTGTTGTGTATGAgGAACACCACGAGAAGGACCTGTTCCTGTACATGACCTACAGCAACGAGAGTGTGTACGGCGCCTGAGAGGATAAAAAATTTAGaatgagaggaagaggaagccAGTGAGGGACTTTGGGATGTGATAGAGGAAGGGATGGAATTTAAACAGTGGTGTGgtgacatttttattgttttaccactattaatccattttgtatGAAACTCAGCTTGCAGCGTTGAACATCAGTGTGGTTTGAAGGATGTAACTGGTTTGTGTTTAACTAGAATgggtttaattacatttaacaatGAAAGTAAGGcattgtaatataaatatacgtgacggagggagagaagagatgTAACTGACATAAAAAAGTGAATGGGGGCAGTTTCATGTTCGTGGTGCAGTACAAAATTAACCCACATTTCCATGACTCTGTCCCAGGAGTGACTCACCtgtatttaatgaaaatattattttttgtaaaagtaTATGATAAATTTTGTGGTCAAAAAAGACAGATATGCTGTGTTGTTGTGCTGGtgtgggtttttatttatttttttcaagtgtGTGATATGcacaaaacacatcaaaaatTCAGAACTTACTGAactatgtaaatatacagtatggccaaatgtttgtgtacatctgaccatcacaaccatatatgtgttttgaacatcccattccagtccccctttgctgttataatcatCTCCACTCTattgggaaggctttccgcgagattttggagtgtgactgtagggattgtccattcagccacaagagcattagtgagtttGGGCACTGTTGAGAAGGTTTAGTGCacagtctgtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggccactcaagttcttctacactaaccttggcaaaccatatttTCATGGACctagctttgtgcacaggggcattgtcatgctggaacaggtttgtgcctcttacttacagtgaagggaaactgtaatgctacagcacacaaagacattctatacaattgtggcaacagtttggggaagaacacGTAcagtatgagtgtgatggtcaggtttccataaacctttggccatatagtgtatgtaaaacACCACAAAAACTACCTTGAGTTTGAAGTGACTAAATCACTGATATATTGCCAACATATCAGCTTTAATGAGGTCTGACTGTTAACAATTTGAGAAGTGATATTTCAAAGCAACCTGAGGCAACTCAGAGTTCCAAAACAGCCAGATAGTGGGAGTCCGAACTGCAGGTTCATCTTTCATAATATAGGAACAGTTATTAAATGTTTCAAGGGGAACAGTATTAAAAGCTGTGGCAGTGTATGGTAAGGACAAATGGTATCAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15191 lncRNA downstream 31940 22869159 ~ 22869411 (-) True G12808
TU15188 lncRNA downstream 37333 22863485 ~ 22864018 (-) True G12805
TU15180 lncRNA downstream 71480 22825000 ~ 22829871 (-) True G12797
TU15019 lncRNA downstream 144737 22754738 ~ 22756614 (-) True G12657
TU15016 lncRNA downstream 147410 22749613 ~ 22753941 (-) False G12656
TU15200 lncRNA upstream 11183 22919285 ~ 22928564 (-) True G12816
TU15203 lncRNA upstream 30124 22938226 ~ 22938796 (-) True G12819
TU15307 lncRNA upstream 212508 23120610 ~ 23121495 (-) False LOC113542417
TU15311 lncRNA upstream 223173 23131275 ~ 23131498 (-) True G12917
TU15401 lncRNA upstream 224824 23132926 ~ 23165584 (-) True cxcr3.2
XM_026940149.2 mRNA downstream 8724 22887194 ~ 22892627 (-) True LOC113542547
XM_026940145.2 mRNA downstream 15732 22875687 ~ 22885619 (-) True LOC113542545
XM_026940144.2 mRNA downstream 15737 22875687 ~ 22885614 (-) False LOC113542545
XM_034304191.1 mRNA downstream 29236 22860265 ~ 22872115 (-) False LOC113542546
XM_034304188.1 mRNA downstream 29236 22860265 ~ 22872115 (-) True LOC113542546
XM_026940066.2 mRNA upstream 17451 22925553 ~ 22931345 (-) True tpi1b
XM_026940258.2 mRNA upstream 97409 23005511 ~ 23010223 (-) True gnb3a
XM_026939752.2 mRNA upstream 106753 23014855 ~ 23025868 (-) True p3h3
XM_026939954.2 mRNA upstream 212370 23120472 ~ 23129313 (-) False LOC113542417
XM_026939953.2 mRNA upstream 212370 23120472 ~ 23128683 (-) True LOC113542417
XR_004578404.1 other downstream 1626010 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3077668 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3154468 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 3155411 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 3198191 19702611 ~ 19703160 (-) True LOC117597712
TU16308 other upstream 1328190 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1483428 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1627758 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 2492654 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 2492654 25400756 ~ 25404306 (-) False G14258

Expression Profile