RNA id: XM_026940083.2


Basic Information

Item Value
RNA id XM_026940083.2
length 1768
RNA type mRNA
GC content 0.43
exon number 2
gene id cxcr3.2
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23132926 ~ 23165584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttcatctctctgtgtaatatgtgctgaacagacagaaagacaggagaGACTGTAAGACCACTTTGGCACTGTTGAATGTCCAGTATTCTTGGTGACAATGGCAACACCTGCAGACTATAGTTCCCAATCTGTTTCAGATTATCTGGACTATAACGAAACAGATGAAAATTCCTCACCCTGCAATCTGGCAGAAACATGGCGTTTCATTCGTCTGTTTGCCCCTACAGCCTACATCATGATCTTCATCCTGGCTGTACTGGGTAACGTGCTAGTGCTGTTTGTAATCCGCCGCTATCGTCAGTCCCACCACAGTCCCTGCTCCTTCTCGCTGACCGACACGTTCCTGCTCCACCTGGCCATCTCTGACCTTCTGCTAGCCCTGACGCTGCCCTTCTTTGCAGGCCAGTGGATCAGTGAGTGGGTGTTCACCACAGGCGTATGTAAAGTGGCAGGTGCACTCTTTTCACTGAATGTCTACTGCGGCGTGCTCTTCCTTGCCTGCATCAGCTTTGATCGCTACTTGGCTATCGTCCATGCCATCCACACCAGCTGGAGGCACAATACATGCCTGGCTCAGTTAGCCTGTGCACTGATCTGGATCTGCTGCATCGGTCTTGCTGCCATTGACATCCATTTCCGAACTGTGGTGGTGCTACCTGGCTATGATAAGCAAGTGTGCATTTTAGACTTCAAAAGTGAGAGTTTTAAACAATGGCAGCTAAGCCTGCAGCTCGTCAACCTGCTGCTAGGCTTTGGCCTCCCACTACTGGTAATGCTCTACTGCTACTTACGCATTTTCCACACATTGTGTCACACAAGCACACGCAGGCAGAAGCGACGCTCCCTCAGGCTCATCATCTGCCTAGTGGCCGTGTTTGTGTTTTGCTGGGCACCATACAACATCTTTAAGATGGTTGACAGCTTGATGATACTGGAAATAGTGAGTTCCAGCTGCGAGCTGCACTACGTGCTTGATATCGGCATCATGGTGACAGAGACCCTGGGACTGGCTCACAGCGCCCTCAACCCACTGCTATACGGCTTTGTGGGTGTCAAGTTCCGCCGTGAGCTTTTCCAGATGTTCAAGACAGCTTTGAGTTCTGCTAAATGCCTTGGGTTGACCAAATGGGCGCAGGATCAAGGAATCACTCGCAGGCCAACAGGTTCCTTCAGCTCTGTGGAGAGCGAGAACACCTCCTACTTCTCAGTTGTGGCATAAGTAAAGCGATTGCTgggcatttttgtttgtttgttttcatttcatttgagagaaaaaaaatgtacatattgtttgtaaaacaaaaattatttttgtaatcccaatattatattgttgttttgctatataaacaaattttgcattttccactttttttttacagtttaattaagAAGGatatatatttcatgttttattgaTAGTTTAGTAAGCATAAATGCCACTGCTAAAAAAATGTTGTCTTAAGCAGGAAGTGAAactattttcagattttcattttaatttctctcTTCTTATTTTTCAAAGCAATATTTCCAAGTAATGTTTCCAACCATCTTGTCAAGAAGCTAAGTCATCAGTTCCAtacatagcttttttttttttttttttttttttttaaagaggcaAACGTTCTACTGGTGCAGCCAAACCAGAAGCTCATTAAAAACTACACTGTATTAGTATTTTGTTTTGGATGATAGATTCccatgtattaaatgtattaatgcaCCAGTTGAAATGGGTTTGAAATATGGTGCTAATGGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002522 leukocyte migration involved in immune response biological_process
GO:0006935 chemotaxis biological_process
GO:0009617 response to bacterium biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004945 angiotensin type II receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15311 lncRNA downstream 2469 23131275 ~ 23131498 (-) True G12917
TU15307 lncRNA downstream 12472 23120610 ~ 23121495 (-) False LOC113542417
TU15203 lncRNA downstream 195171 22938226 ~ 22938796 (-) True G12819
TU15200 lncRNA downstream 205403 22919285 ~ 22928564 (-) True G12816
TU15191 lncRNA downstream 264556 22869159 ~ 22869411 (-) True G12808
TU15865 lncRNA upstream 338801 23477319 ~ 23499991 (-) False cicb
TU15873 lncRNA upstream 367502 23506020 ~ 23506298 (-) True G13361
TU15881 lncRNA upstream 389172 23527690 ~ 23527940 (-) True G13369
TU15915 lncRNA upstream 535269 23673787 ~ 23674145 (-) False dedd1
TU15941 lncRNA upstream 675759 23814277 ~ 23816058 (-) True G13424
XM_026939954.2 mRNA downstream 4654 23120472 ~ 23129313 (-) False LOC113542417
XM_026939953.2 mRNA downstream 5284 23120472 ~ 23128683 (-) True LOC113542417
XM_026939752.2 mRNA downstream 108099 23014855 ~ 23025868 (-) True p3h3
XM_026940258.2 mRNA downstream 123744 23005511 ~ 23010223 (-) True gnb3a
XM_026940066.2 mRNA downstream 202622 22925553 ~ 22931345 (-) True tpi1b
XM_026939886.2 mRNA upstream 12201 23150719 ~ 23157164 (-) False LOC113542387
XM_034305635.1 mRNA upstream 12201 23150719 ~ 23156746 (-) True LOC113542387
XM_034305629.1 mRNA upstream 12201 23150719 ~ 23156209 (-) False LOC113542387
XM_026939810.2 mRNA upstream 31882 23170400 ~ 23178284 (-) True LOC113542343
XM_026939814.2 mRNA upstream 47513 23186031 ~ 23190084 (-) True LOC113542345
TU15196 other downstream 225865 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 225865 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 1858626 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3310284 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3387084 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 1097774 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1253012 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1397342 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 2262238 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 2262238 25400756 ~ 25404306 (-) False G14258

Expression Profile