RNA id: TU15865


Basic Information

Item Value
RNA id TU15865
length 2510
lncRNA type sense_over
GC content 0.45
exon number 2
gene id cicb
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23477158 ~ 23527323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagaaagaaaagaaagaaagggttcGTGAAGCGAGCGAGggtgagaggagagaaaacCGAGAGaaccggagagagagagagagagagagagagagagagagacgaggcTAAATGAATGGTGTTGTGAGCCGCCGACTTTTTACTACGAAGGCGTAAGGGAGCGCGCGGGGAGGAGCGGCTGCGGCGAGGCTCGCGCGCGCGAGCGAGCAAGCGGCCCTTTATATTACTGCAGACTCGGACTCCACACGGGGCTCGCGCTGTGCTTCACATGCGTGATCTCCACTCAGCATCGCGCTGGAGCATCTCCACTCCAACACACTTTTATTATCGCGGTGTCGCCGGAGCTGTTAGGACGAGCTGGACTCGTCGTgtgcacgcgcgcgcgcgcgtgtgtgtatatgtgtatgtgtgtatgtatgtgtgtgttttcctgtctGACATTGTGTGAACGGTTCTGAGTGCGTTAGTGCTCACAGGAGGGAGCTGAGTGGCGGGGATTTGAGCCTCCCGCATGACAGAGACTCAACTAagatttgtgtgtgcgtgtgtaggaGAGGGGGCAGAAAAGGAGggcatttaaaaatgaagattTGTTTAAACCTCCTACCCACGTTTCGGTTTCGGTCAGTGTGAGTCCCGGGGCTCAGTCGTGATCAGCGGGATTGCAGTGGGGAAGAGGACAGGACATCTGGACTGTCCGTGTTCACCACCAGCCTGTCACTGTGTGGAGCAGAGGATGCTCACTCCAGCGCCTGTGTTAATGCTAAAGCTTTAGGAGACACTGCTGCTGTGCGGTTTCCGTTAGTCACATGACGGGTTATAGTTTGTCAAAGCATGTTGTAAGCCATTTCAGTGAGTCACACTGCTGAGGGGGAAACAGGTTGCACTTGCTAGTGATGCTTTGCCTCCTTTAGGGACGTTTTCTCTGCCTTAGCTTACATACTCAGACGCGACTGAACCGTTAGTTTGTCAGTTTTAAGTGTTCTCGAGGTGTAAGGTTGCGGTGAAATGAGGGCGAGCTCGGATTGCCCGGTTGCGGGTAGCGGCTCAGGGGCGTTCCCGAGGGGACGGACTCAACCGGAGCACCGCCGCCGCCGCCACtgccactgctgctgctactgaaCCCGCggcacatttacacacacacacacacacacacacacacacacaccatttctcATTGTCTTAAATATCCACACTTGAACTTAAAGCATTATTTTACTGCGAAGGCTTCCTTGGGACTCTTGAGACTTGAAGATTACAGAATTGTTCTGTAAACAGTGAAGGCAACCCTGCTACTATACAAAGGCAGGACTTAGGCAGGCATCAGATTCCTTTACAgactaaactgattttttttttttttttttttttataaacatgacATGGAAGTATCAGTCGGGCACAAATGGTTTGTCATAGGCTCATGGTTTACTGCCAGTCATTGTGAGGCTGGCCTCCACTGGCTAGGTTTTAGAGATGATGAAGACTTAATGGACTcgtatattttgatatttactTCCCCTTTCCCAACTTCCATTGTGTTTCAGTTTTAAAGGCTTTTTATTGGCAAGCATTGTCAAGGCACTGAATAGCTTCAGTGAGGGAGTAGCTTAGCTTTCACAAGCTCCTTCTTCCTATGATTGGCTGTAGTAGATGCCAGTCACAGCCTAAGCTACAGATTGGCCAGCCATGAAGGAAGATGTTATTAGAAGGGAAGTCAGTGGGCACATTATGGCCATTGATTGGAAGTTTGGAagttttttcatatatattgagaaacatatttaattttttttctttccatgccattttattcatgttaatATGAGATGAGGAGGTAGAAAGGATGGTGAAATACATTGTTAGGAATTTACTATAAGacataactttttaaaaaagaaaaagcaaactTGACTTTTAATTTAACTCAAATCTACAGGTCAATATGTTATTGAATTTCTCATTACTGTTCTTAATACTATTCTTGTGGATCTGATCCGTATAACCAACATACTGCACCTTTTTGTCTTGCTTTTGAGGATGGAAGTATGAGAGgacaggagcaaaaaaaaaaaaaaaaaaacaactccacTCTTAGTTTGTCCTCCAAAATCGCACTTCAACTGCGACATTGAACTTTTCCTTTTATTGGCCTTATCTTGATAATCACAGAGatgtgatgattattttttcttctttcaagaacataaatatattatatgctCCTCTGTTGTGCAGGAAATCCCAGTCTTTTAGCGCTAGTTCAACCTTCTCCACTAACATTCCTCCCTGTTCCTTCATTCCTGTTTTTCCCTCCTTCTGTCACTTTATTGGTCTTTCTACATCTCAGCCACTTTAGGTTGAGCTAAGAGAGAAAGGtggaagaagaggagaaggaggcaGGATGTCTGTGATGATTGTGCTGTGTGAGGCTTGTTCGTGTTGTACATAGTTCTGGTGGAGTCTCATGGCTCTGTACCATAGTAAGGAGCATTATTAAACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15401 lncRNA downstream 311735 23132926 ~ 23165584 (-) True cxcr3.2
TU15311 lncRNA downstream 345821 23131275 ~ 23131498 (-) True G12917
TU15307 lncRNA downstream 355824 23120610 ~ 23121495 (-) False LOC113542417
TU15203 lncRNA downstream 538523 22938226 ~ 22938796 (-) True G12819
TU15200 lncRNA downstream 548755 22919285 ~ 22928564 (-) True G12816
TU15873 lncRNA upstream 6029 23506020 ~ 23506298 (-) True G13361
TU15881 lncRNA upstream 27699 23527690 ~ 23527940 (-) True G13369
TU15915 lncRNA upstream 173796 23673787 ~ 23674145 (-) False dedd1
TU15941 lncRNA upstream 314286 23814277 ~ 23816058 (-) True G13424
TU15956 lncRNA upstream 411088 23911079 ~ 23912280 (-) True G13438
XM_026939704.2 mRNA downstream 9407 23449585 ~ 23467912 (-) False gsk3ab
XM_026939703.2 mRNA downstream 9407 23449585 ~ 23467912 (-) True gsk3ab
XM_026940143.2 mRNA downstream 32384 23427178 ~ 23444935 (-) True znf574
XM_026939928.2 mRNA downstream 58581 23348325 ~ 23418738 (-) True grik5
XM_026939929.2 mRNA downstream 90753 23348325 ~ 23386566 (-) False grik5
XM_026939888.2 mRNA upstream 37828 23537819 ~ 23579291 (-) True erfl3
XM_034307000.1 mRNA upstream 92588 23592579 ~ 23634924 (-) False pou2f2a
XM_026940160.2 mRNA upstream 92588 23592579 ~ 23634924 (-) False pou2f2a
XM_026940159.2 mRNA upstream 92588 23592579 ~ 23634924 (-) True pou2f2a
XM_034307004.1 mRNA upstream 92588 23592579 ~ 23609961 (-) False pou2f2a
TU15196 other downstream 569217 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 569217 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2201978 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3653636 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3730436 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 736301 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 891539 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1035869 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1900765 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1900765 25400756 ~ 25404306 (-) False G14258

Expression Profile