RNA id: XM_026940000.2


Basic Information

Item Value
RNA id XM_026940000.2
length 2798
RNA type mRNA
GC content 0.42
exon number 6
gene id dedd1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23659523 ~ 23674479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTAAGATCAACTAGCCTAGCATAGCgactaaacaataataataataatattattcctGTGAGATAAACTAGCCTAGCATAGcgactaaataataataataataatattattcctGTAAGATAAACTAGCCTAGCATATgactaaacaataataataataataatattcctgTGAGATAAACTAGCCTAGCATAGCgactaaacaataataatattccTGTGAGATAAACTAGCCTAGCATAGCgactaaacaataataataataatattcctgTAAGATAAACTAGCCTAGCATAGCgactaaacaataataatattgttcCTGAGATAAACTAGCCTAGCATAGCgactaaacaataataataatattattcctGTAAGATAAACTAGCCTAGCATAGCgactaaacaataataataatattattcctGTGAGATAAACTAGCCTAGCATAGCGACTGATTAGCTAAGCACCTAGCAAACACTTCCTGCTTTTTGTCAATATAAAATTCTGAAATACAAATTTGACTCCTTTTTGTAGTCCCACAGAGCTTCATAACCCGAACCGACTTGACAGCAGTTAACCATGGCAGCATGCTCGAGATATTCTCTGTACTGGGAGGAGACTGACTGCTTGAGCTACTATGACATGCTGTCTCTTCATGAAGTCTTTGAAATTGTGGGTTCCCAGTTGACAGAGACTGACGTCGAAGTCCTGTCATTCCTTCTTGACGAAGTCTATCCTGCCAGACACCCTCTTGATCCAGAAAGCTGGACTGAAGAGGTTTCGCCAGACTCTGATTCACCTGTAAATTCTCCTTGCCCGCGTCTTTTGGAGGCTTGGCGCAGGATCCGCCATACGGGAGAGCCAGGTCCCTTTGCTGCCCGTTGCAGCCCTAAGAGCGGTGTTGCACTGTTGCTGGAACTGGAGAGACGTGGCTTCTTGAATGAAGCAAATCTGGAGCCTCTGTTGCAGCTACTTCGAATTCTTACACGGCACGACCTCTTAGCATTTGTCTCCAGTAAGAAGAGAAGAACAGTGTCACCAGAGAGAGAACCTGTAAGCTATGTGGAAAGCAgagaacacgcacacacaagctCACAGTCAGAGCTGGCAAACACACACGAGTCTCAGTGGAGGGCAGGTGTTGGCTCAGCTGTCAGAGCATCTGCACCAGCACGAAGGAGAAGGGGAAGAGGGCGAGGCCGGACAAGAAAGGCCAGGGATACGTCAGAAAGCATAACTCAGCCTGCACCTAACAAAGTGACCTGCGACATCCGGCTGCGTGTTCGGGCTGAGTACTCGGAGCACGAGTCAGCCCTGCGTGCCAGGGTCTCCTCGGATAAGCAACAGCCTCTGGAGCGCCAGTTTGAACTTTTCAGCCGAGCCAGCCTTCTGCTGCGCGCTCGTGACCTTGGCTCCATCGTCTGTGACATCAAGTTCTCTGAGCTGCAGAACCTGGATGCATTCTGGGCTGACTACCTGAGCGGTGCGCTGCTGGAAGCACTCAAGGGCGTTTTCATCACAGACTCGCTGAAGAGAGCAGCTGGGCAAGAGGGCGTGAGGCTGCTGGTCAGCGTCGACCAGGACGACTATGAAGAGGGCAGGAAGCTACTGCTCAGCAACcagacacacagcacagcaaGTGGCCCAGTGCACAGGCCCTGAGAGATATAAAGGCTGCCAAAAAGAagagtgaagaaaaaagaaaagtgctcTTGGGTTAATTTAATCACGACAGTGCAGGAAGGGCTGTGTATGGACTGACAGTATACAAAGAGAGATTCGAATTCAAGTAAGGTTGAAAGAGACACAAACACTTTATCAAACAGGTACCAAGTATGATAGATGTATGTTTGTAGGTTAATCGCAGCTTCCTGTGCTGCTGGTAATTTGTGCATTACAATATGTCTTTGGTTACTCTACAGATTGAAATGAAGGAGAGCCAGCTGAAACtggttttgtattttatgttaaGGGTAGCTGGGCGATAGACAAGAATTTGCCATGATTTTGCTCTAATTGTGTTGGTTAGGCATCTACATAGAAGAAGAGGATACTGAGCTTAATTAGGTAGTTTGTAACCAGAGGTATTGTTCTGAAAGTACCAAGATTGGTCCCCAAAGACGGTCACTATTAGTCACCTAATCACAAAAATATCCCTAGTACGGTGTCTGTTTTATACAagttggtttgtgtgtgtgctcaccatAGCAGGAAGCTGAAGAAATGTAACAGTGGTATTAGCTTACCTGGTAATTATGGGTATTTATGGAACAGATGTAACCTAACATCTGCGCAATAAACACCAGCATTCCAAGACCCAGGTCCAAAATGTCTCCAAAAGAGACACTCGGAGACAAGTGACGAGTCATTTCTAGTGAAAGGGATTCTGAAAAGAACTCTTTCACTCGAACAGATGATCCAGATGAGCTGCAGTCTTCTTGACCTTAAGTCACAACCACAATGAGcctttatatgattttttttattaagaataTATGGGTTAATACATATGTTATCTTTGtatcatttaaagaaaatgtaaacaaaaagtaGTCGTCATGGGTAGTGATTCGTCTATACTCTTGTTTGTCTGCTGAGtcagttttttctttgtctcttatattttccttctgtttttgtttaatgttttaatttaatgaacGCATGTATAGacgtttatatttaaatttcaaatttaattcTGAATAAAATACTACCACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15881 lncRNA downstream 131583 23527690 ~ 23527940 (-) True G13369
TU15873 lncRNA downstream 153225 23506020 ~ 23506298 (-) True G13361
TU15865 lncRNA downstream 159532 23477319 ~ 23499991 (-) False cicb
TU15401 lncRNA downstream 493939 23132926 ~ 23165584 (-) True cxcr3.2
TU15311 lncRNA downstream 528025 23131275 ~ 23131498 (-) True G12917
TU15941 lncRNA upstream 140152 23814277 ~ 23816058 (-) True G13424
TU15956 lncRNA upstream 236954 23911079 ~ 23912280 (-) True G13438
TU15974 lncRNA upstream 347405 24021530 ~ 24021918 (-) True G13452
TU15987 lncRNA upstream 368129 24042254 ~ 24042606 (-) True G13465
TU15989 lncRNA upstream 369319 24043444 ~ 24043657 (-) True G13467
XM_034307012.1 mRNA downstream 24598 23593863 ~ 23634925 (-) False pou2f2a
XM_026940160.2 mRNA downstream 24599 23592579 ~ 23634924 (-) False pou2f2a
XM_026939759.2 mRNA upstream 6167 23680292 ~ 23702357 (-) False atp1a3b
XM_026939758.2 mRNA upstream 6167 23680292 ~ 23702357 (-) True atp1a3b
XM_026940071.2 mRNA upstream 57477 23731602 ~ 23795116 (-) False si:ch73-22o12.1
XM_026940070.2 mRNA upstream 87248 23761373 ~ 23795116 (-) True si:ch73-22o12.1
XM_026940049.2 mRNA upstream 153313 23827438 ~ 23847366 (-) True vars1
TU15196 other downstream 751421 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 751421 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2384182 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3835840 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3912640 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 562167 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 717405 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 861735 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1726631 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1726631 25400756 ~ 25404306 (-) False G14258

Expression Profile