RNA id: TU16308


Basic Information

Item Value
RNA id TU16308
length 2943
RNA type TUCP
GC content 0.47
exon number 6
gene id LOC117596842
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24236292 ~ 24240079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caGTGATTATGTTCAAAAACATTCAGATAGACTAATCTGTGTGTAGTTTTCATTGAGATACAGCCTAATTTCCCACTTGCTGTAATGTGATCTTATTTTCATGCCTGTATTAGAGCTATATGTGGTCTGAAACAGATGTCCATCTTGGGATAAACATGGACCAAATCAGACAGACTAAACAAAGCCCAATTTTCAGTGACTATCTGTGGGCTAAATAAAGGCCATGACACTGATGTGAACGCAGAAGTGTGGGAGCTGGACAACTTCCAAATATATTACATAGTGGATATCACCCAGGATCCATTAGAAGGAAGTGTTCAATCATTACCCGTAAATCATTACTGTATTTCACTTTTCATATTCGTAATAGtcaatgtaaacatttaaacctaAAGATGTTTTCGTCATTTCTTAGTGTAATTCTGTAGATGTATCCAAGATTGGCACCACAAGTGGCCTGCTGACACTTCCTGAGGAAAAGGCCCCTACAATCCTTAGAGAACATGAAGAGGCAAAGAGACTATTTCCTCACGGAAGCTGCTTGTTAAAGTCGCTGTCAGAGACCTTGTAGAGAAACATGGGTTTAACAGAAAAGCTGGCACTAGCAAAGGAGATTGTGTCATTGTTCCCCTTATTAAGGATTAAAGTCCCATTTGGCGAAAATAAGGGACATATGAGCTGTGCTACACTATGTTAAATATCCTCATTCATCTGCATCTGGGAGAAGTGTTGCCAGCAGTAAATGCTGTGTGAAATCTGCTGTCTCATACCTGTTGGAGTTGGTGACAGCTGGTACCAGCATGACCTCCTTGCTCAGTGAATCTATGAAAGGGTCTCTGAAGTCAACTCAGCCGCAGTTAGTTTCCATCAGTTCTCTAGGACATGGAGCCCGCAGGGCTTGTTGCTGCAGGCTCACTTGGAGAAGTTGTTGAAGTGTGGCTTCCATCATGCTGCTTCAGCAGCAGTCCTACCAGATCCATGCCGATCCTCTCGAAGGGGACGCCAATAATGGGGAGAGGGATGAGCGGCGCGGGAGCAGGCTTATAGGGGGTCGTCCTCTGGCACTGTGGGCACTGCTGGCAGAAGTCCCAGACCTCGGCGTCCATCCCGGGCGAGGTGAATCGGTCCTTCATTTTCTCGGGGAGCCCCAGGTGCCCCCCCCAGTGGGTGCGCATGGGCTAGGTGCAGAAGGGCCTGGGTGCGGCTGCGTGGCACTACCAGCAGTTCGCTGGGCTGGTTTCGGCGCTCCGTCTTGAGGTACAGCAGGCCTCCTCGCACCAGGAACTAGGAGGTTGGCAGCTGCTGGTCGGGCTGCTGGTGTACGCCTTCAATGAACCGCACCTGAGCCCAGCAGTTCTTCAGTCTAGCATCCTCCTTCTGCTCCTGGCCGAAATTTCCCTCTCGAGCGACCTGCGAATATACAGAGGACACAGGATTAGTCGGGGGGAGGGGCTCACCTGCTGAGGTCGCTCCGGCGTCTCCTTCGTCCTGGGCGAGGCATGCTGGCCAGACCCTTGCTCGCCTCTGGGATGAGGCCCACCTCGCTGCTTCTTCCCCACTCCTTAGCCTGGTGGCCCACGGAGACATGGGCTGCAGGGACCTCCCTGGCATCCCCATGTACACAGGAGACCGTCAGTCGGCATGGATGCCTTTTGGAGCTTCCCATAAGCGGAGCGGCTGGGTCTTCCCTCCCCTTGGGTGTGCAGATCTAAGCGTCTCGTCGGAGAGGGTCGGGGAAAGTCACATCGGTCGCCCCTGCCGATCTCCAGAGTAGCCACCGCTCGCTCCAGAGCCTCCAGCATTTCCCTGGGGGTGCAGGCTCCCCTTCCTTTCTTCGGGCGGCAGAGCTCGGGTTCCCCTTCCTTTCTTCAGGCGGCAGAGCTCGGAGGAACCGATCCATAGATGGCTGGAGCCACCGCTTGGCAATCCGCAGCAGGGCTTGTTGCTGCAGGCTCTTAGAGAACGGGGCGGTTGTCGCGCAGAGTGTGAGACTCGTCTTCTCCACTTACGTCTCCGTctgcaaaaagaacaaaattagCGGGAAACCCTCAGTTTCCTCTGTGAGGGTAGATTTTGGCTGCTGCTTTTATTGGCTGCCAGACACGCTGCAGAAAAGACTCATACTTGACTAAAGAAAATGGCTGTTTCTTTTGACAGTACTGAAGTCCAAACATTTATGAAAGATTTTGACAGTCCTAGAAATATGATTTGTGATATACCATTTAAACTAACAAAGTACTTTTCTGACAAATTTTCCTTTGAGAAGCCAGCAGAAGTGTTTCTTGGTCACAGATTAGATAGAGTTAGAAAGaatgggtaaaaaaaacaacaaggtgTTAGTGCCAGTCACATTTCAGTACATCTTgataattaatacaaataaaattcctATTTAGCGGTGACAACATGCAACATATGTATATAAAGTCTTGTGGTGGAAATGCTAAAATACAAGATTATTGTGATGGTGTTCATTATGCTAGACACCCTCTATACCAAAACCACCCCAATACATTACAAATTCaatttggaaatttggaaaCAACAAATACTTTCTCTGCAAACAGATTCTGTCAATTTTCTTTGACAAACCAAGTGAAAACTATGCATACCATGTACAGCTTAATGATGCAAGTGCAACTGGTGTCAAGCATAACTCTTGCCTGACTAGCAAACAGTATTTTCATGTAACTGAAAATATTGGCATGGACATCATGCATGATGTGTTAGAGCCAGTTGCACCTCTTGAGGTCAAATTGATGCTGAGACATTTCATTTATGAGAAGAGAAGgttttagaatatttaaatgtttttataaagacTAATGACTTTTTATAATGTATGATGAATGCTTTGAAGTGCTTGTTTGACAGTTTTATAGTCAGCAAGCATACTATAATGTAAAAACAGCTGAATGAACAACAAATAAGAACACAAACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16303 lncRNA downstream 8523 24224266 ~ 24227769 (-) True G13725
XR_004577828.1 lncRNA downstream 37913 24188755 ~ 24198379 (-) False LOC113542360
XR_004577827.1 lncRNA downstream 37913 24188755 ~ 24198379 (-) True LOC113542360
TU16276 lncRNA downstream 83441 24151705 ~ 24152851 (-) True G13703
TU16274 lncRNA downstream 87058 24142842 ~ 24149234 (-) False LOC113542286
TU16344 lncRNA upstream 26575 24266654 ~ 24269804 (-) True G13752
TU16340 lncRNA upstream 77603 24317682 ~ 24318420 (-) True G13748
TU16376 lncRNA upstream 147210 24387289 ~ 24388003 (-) True G13782
TU16377 lncRNA upstream 150432 24390511 ~ 24391404 (-) True G13783
TU16374 lncRNA upstream 200567 24440646 ~ 24696017 (-) True G13780
XM_026939689.2 mRNA downstream 87025 24142599 ~ 24149267 (-) True LOC113542286
XM_034314232.1 mRNA downstream 97132 24120864 ~ 24139160 (-) True otoa
XM_034314187.1 mRNA downstream 97132 24122989 ~ 24139160 (-) False otoa
XM_034314143.1 mRNA downstream 97132 24122989 ~ 24139160 (-) False otoa
XM_026940005.2 mRNA downstream 133123 24082850 ~ 24103169 (-) True setdb1b
XM_034311735.1 mRNA upstream 31764 24271843 ~ 24285542 (-) True LOC117599236
XM_034311761.1 mRNA upstream 40045 24280124 ~ 24285542 (-) False LOC117599236
XM_034310486.1 mRNA upstream 54482 24294561 ~ 24311366 (-) True LOC113542498
XM_034310455.1 mRNA upstream 79227 24319306 ~ 24331967 (-) True LOC117599025
XM_026940079.2 mRNA upstream 92540 24332619 ~ 24374787 (-) False atp8b2
TU15196 other downstream 1328190 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1328190 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2960951 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 4412609 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 4489409 19746812 ~ 19746883 (-) False trnaq-cug_9
XR_004578322.1 other upstream 151451 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 295781 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1160677 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1160677 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 1161866 25401945 ~ 25404306 (-) False G14258

Expression Profile