RNA id: TU16407


Basic Information

Item Value
RNA id TU16407
length 1049
RNA type TUCP
GC content 0.40
exon number 3
gene id si:ch211-105c13.3
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24535860 ~ 24546841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGAATGCGCACACGCCCagttatttaatgaaaaaaacactTGGAAAGACTTTGGGATTCACGAAAGAGCCACTTAAGGGCGTTGTACACACTCCTAGGCAGAGAAAAGCAGCACTACGAAACTTCAGCTTACAGAATCAGCAAGATGGAGTCAGCTATCAAGACTGTGGTTGGGCAGTTCGTGAGTTCGGCCCGTGGCAAAGAGAGTCTCAACAAGGACAATTTCCAAAAACTGGTCCAGCGTCAACTGGGGAACATCATGGCTGACACAGACAGCTCATCGGCAGTAAAGGATATGATGCGGGGCCTGGACGAGAACCAGGATGGGAAGGTCAGCTTCCAGGAGTACATGACCCTGATTGGCTACTTGGCCAACTCACTGAGCGAAAGTAAAACCAAAACTCAGACAGCCACCAACTAAGACCTCAACACTCAACAGCTGACCGACTTCGCCATTGTGTACTCCAATATTGCTATAAACCTGGCAAAGCAAGCCCACTGTGTATGCCCACaatattttttatgctttttttttttacacagctgCCTAAGTCAGTACTGACATATCTACAATAATTACTAACACATTGTCCTGTGGAGAGTAAATGTTATCCAGTGTTAATTTACTACCTGCTATATGCCGAAATGATgtacactgctctcagccatcATTCACAGTCCTATGAGAAATGCAGCATAGCTGGACTGAGCACTGATGCTACAATGACCTTAAATATTGTTTTGTACTTTGGAGATATTGCATGGAAATAAAAAGGTCAAAAATCAAATTGTTTCACTCTGCTCAGTCAACTGTCTGAAATGTGGAACCagagaaaaagaacattttttaagaTGATCTTTTCGGTGCAAATTATTAAATACTAGAAAATTAACcctgacaaaatacaaaaaaatatataagaattTTCCAAATGATTGATATTATGCTTCTTCAGGAGCAAATTATACTAGCATAAGGACATGGAATATCCTTCATACCCTCCTGTTATTCagctttaaatgaaaattgGGATTAGTTTATTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16377 lncRNA downstream 144456 24390511 ~ 24391404 (-) True G13783
TU16376 lncRNA downstream 147857 24387289 ~ 24388003 (-) True G13782
TU16340 lncRNA downstream 217440 24317682 ~ 24318420 (-) True G13748
TU16344 lncRNA downstream 266056 24266654 ~ 24269804 (-) True G13752
XR_004577825.1 lncRNA downstream 295818 24237211 ~ 24240042 (-) False LOC117596842
TU16416 lncRNA upstream 5590 24552427 ~ 24555612 (-) False LOC113542209
TU16411 lncRNA upstream 26262 24573099 ~ 24578247 (-) False pbxip1b
TU16422 lncRNA upstream 67416 24614253 ~ 24619949 (-) True G13819
TU16439 lncRNA upstream 167152 24713989 ~ 24718852 (-) True G13834
TU16983 lncRNA upstream 516631 25063468 ~ 25065486 (-) True G14303
XM_026939725.2 mRNA downstream 1365 24532771 ~ 24534495 (-) True s100t
XM_026939668.2 mRNA downstream 60652 24442387 ~ 24475208 (-) True LOC113542274
XM_026939669.2 mRNA downstream 102894 24419481 ~ 24432966 (-) True tuft1a
XM_026940206.2 mRNA downstream 131330 24391530 ~ 24404530 (-) False si:dkey-92i15.4
XM_026940207.2 mRNA downstream 135105 24391530 ~ 24400755 (-) False si:dkey-92i15.4
XM_026939727.2 mRNA upstream 427 24547264 ~ 24550488 (-) True LOC113542308
XM_026939568.2 mRNA upstream 5461 24552298 ~ 24561375 (-) True LOC113542209
XM_034302572.1 mRNA upstream 14663 24561500 ~ 24573488 (-) False pbxip1b
XM_034302574.1 mRNA upstream 14663 24561500 ~ 24573488 (-) False pbxip1b
XM_034302563.1 mRNA upstream 14663 24561500 ~ 24573488 (-) True pbxip1b
XR_004578322.1 other downstream 135105 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 295781 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 1627758 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1627758 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 3260519 21263577 ~ 21275341 (-) False rxrbb
TU16925 other upstream 853919 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 853919 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 855108 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 1000197 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 1000220 25547057 ~ 25589703 (-) False cadm4

Expression Profile