RNA id: XM_034302572.1


Basic Information

Item Value
RNA id XM_034302572.1
length 4297
RNA type mRNA
GC content 0.43
exon number 7
gene id pbxip1b
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24561500 ~ 24578247 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTCTGGAGTAGTGAGCATGGGTCCGCTGTCTGAAGGTCAGGGAGAACTGCATGCAGAACCAGATCTCACACAATCATCAGCGCTCTCGGACACTTCCACAGAGCAAACTCACCCTCCTGATCCCCACAGGTGACACCACTAGAGAGCAGTGAAGATGCAGCTGTTTTACACAGTACCACTGTGAAAGAGGACATGGCGTCCAGCATCCCTGCTCATGTTGAAAACCTGACCTCTTTGACCCCTGACCCTGGAGAGCAAGGAGCCTTTGGTGATGATTCTGAAAGCCAACCCCTTATTGATACAGAATCATTCTCtgactcttacacacacatcagcccATCACCTGTGTCCACATCACTGCTTGGAAcctcagaagaagaagaggggCTTTCACAAGGGGAAGAGAAGGGTGAGCTGAGGAAGACTCTGAGAGAAGAGTGTAAGCCAGACGAGAAGGTGAATGAGGGTGATGGACTAAGGAGGAGGAATGTCTCTGTCCCGACCCCTTTGTACCATCgagatgatgaggaggaggaggaggaagagggtgAGGAAGAGCAGTTCAGACAGccacagagagaaggagaaggagacatTGGGTTCACCTTGAACAAGTGCATTTTTGGAGCACTCATTCTTCTAGGCCTGGGCACCATATTCTTCTCtgAGGGGGATGCTGATGCCAAGGATCTGAAATATCCGGAAGTAAAAAAGgAGTGGTTGAGTCCTGATGCTCAAGGAGATGCGCCTGAAGGTGTCCAGCCACCAAAAATACTGGACAAACTGGCCAAGGAGGACCAGCAAATTGTAAGCTTACAGGCAAAGCTTCAGgaacaggaagtggaattAAAGGCTGCACAACTGCAAGTGGAGGAAGGCACCAAGGAGAGACTGAGGAGGGAGGAGCTGGAAGCAGAAAACCAGAGGATGAGAGGAGAGTTGGATAAACTGCCTGCCCTTCAGAAAGAGTATGAGCAAGAGAATGAAAgggtaaagagagagagcgagagagtaaATAAGGAGCTTGAAGCACTTCCAGCTATGCAGAAAGAGCTGGAGCATCTAAGAGAGAAAGTTATGGAGCTCACTCAGAgtacagTGAGTGTGCAAGCTGCGATGCCCTCTGCTGGACATGAAGAGGTGCCTAGTAGTcaggagaggaaagagagaaaggataAAAAGGCTTGGGATaaacagaggaaagagaaagaccttcaaacagaaaagaaagaatggaagaaggacaaaaatataaagttaGGTGAGCAAGATGACAAGGGAAAAAGCACAAAGGATCGTAAAGAGttggagaaagaagaaaagcaagGGAGGCGAAAGGGGGAAGggaaaaacaggcaaaaagaCCATAAGCAAGAAGATGCCCAAAGATGGAAGCTTGATGATGAAAAAAGAGAGCTTAAGGAAAGGAGTGGGAAAAGAGAGGGGAAGGAAGATAAAAAGTGGGAAAAGGACAAACATGGGGAATTTGTTGACAGAAGGcgggagaaaagagagaaaggaaaagatgaTAAGGAACGGAAGCAAAAGAGTGAGCAAAAAGACtggaaggaagagaaagaatgGAAAAAGGGTAAGCAAGCTAGTCGGAATGaaaaagaatggaaagagaaaagtgaaaaaaagaaggatTGGAAGGAGAGAAAGGAATGGGgtgatgaaaaagagagaggagcaTCAGGTGATGAAAAGTACAGTGATAAAAGCCCAAAGGAGAAAATTAGGAAAGGCAAGAAAGATTATCACAACggaaacagtgaaagaaaagaaagggagGAGAAGCATCGGGgtgggagagaaaaagacaagcCCAAAAGTGGAGAGAGAACAGAAGgatggaaagaggaaaaaaaatacaaagacaaGAAGcataaaaaagaggaaaagatgagcagaaaagacaaacatgaGGCATTGCACCATTCATACAGTGACCAAAAGCACAGCAAAGACCACATGCATGTCAAATACTGGGCTGAACAGAGGGAGAAGATCCGTCACTATTATGGGTCAACAGAAGGGTGCGCTGATGTGACAGCTTGTGCACACGCAGAGGGGCTTGCTCCTGTTTCTCAACGAGATTTTGAGGCGTTCATCTCGAGCTATTTGATGAAACTTGTGGGAAACGAGGACCAGACTTCCAGAAAAGAGGAACTGAGCAAGCTGATTGGTGAGTTCTTCGCTGACGGAGTCTTCGTCCATGACCAGATACCATTCAGCGAGTTTGTGGAGGATGTGGCGGACATTTTGGAAGACATGGCAGATGGAGATGAATATGAAGAGCTAGAGAATGAGATGGAGGGATTTGCAACAGAGGCGATGGAGAAATTTGGGCTTCGGGAGAAAGATGGGAATGAAGAGAAAAGAGCgggaagtggaaggaaaagGATGAAGGGGTAGAGGGGTAGCGTTATAGAGAGGATTTTGATTAAAGTGTGCCGTGTGTAGTTCTTGCTCTGAAGCGTAAAGTGATCATTTGTAATATGATGGTTCCACATTTACATGCACCTGTTTGGTTCCAAACAAGAAATCTAAGCACTGCTACTGTACAACTGTTTCCTAGCTGTAAATGTGAGCAGAGTATGTGTGGGTACATTATGGGTTCTGTGACGTGACACCAGCTACACGGTTCATTACTGATGACATTAGTTTTACAAGCAAAGTGGGCAACTGTGCTTGCTGCCCAAAATATCTGcataacaagtgtgtgtgtgtgtattcgtgTGTGTAAAATGAGGCACTTCCTGTTATTGACTGAGTGGTCCAATAGTTTgagggttttgtttgtttgtttttttaaggttttagaGTTTTATTGCCCATAAACAGCCATCTGCCAACCACATAAAATAGAACAAATACATACATTAGGTTTTTCATTGGAAACAAAAGGTTGCTATTGCTTCATggaatgtacactatatggctaaaggtTTGTGGATACTTCAttataacacccatatgtgcttgttgaaaatccctttccagatttagtcctcctttggTGTcttaataacctccattcttcgggaaaggttttccactagattttggaatgtgcctgtgtgctcattcagccacaagagcattagaaAGGTTGGCCAGTGATGTCAGacaaggaggcctggtgtgcagtcgaCATTCagattcatcccaaaggtgttcagtgggattaaattcagggctctgtgcagaccactcaagttctttcacaccaactttggcaaactaCATCCTCATGgtcctcgctttgtgcacaggcgcattgtcatgctggaacaggtttgggccgcTTAGCTGAAATagtaacgctacagcatacaaagaccttgtatacaattgtgtgcttagAACTTTTTGGCAATAATTTGGGGAAGACcagcatatgggtgtgatggtcaggtgtcctccATATTCATCCATTGACAGGGTTAGTGTGTAAGAGTATTTGTATGCAACATTTTAAGAAGTCATGTAGTTTTTTGCCGTAGCAGCACTAAGATTTCTTCACAATGTACTATAATTCCTGTCATGGACAACATTTCCAAGTTTGGTATATGtgttttgcttatttattaatgttgtttcTCTGGGAATGTTTACCTTTGTGTTGTTTAAAGTTTGAGACTTGTTGAGAAAGTAAGAAATTAGTATTCTTACGCCCAACCAGTTCATAGTTAATAGGGTAGACTTGCACTGTCAGCAGGGCTTTTGACTCAATATTTTGTCTTGCACTTTATGTTCTGGCTTGTTTACACCTGAAAAAATACTGTCACTTGGTACAccatatttaaaaatttgtcCACACGTATGACATAAAACGTCCATCTTGCAGTGATTATTTGCATTATCGAGCAATACAAATCTGTAAGAAGGTTTTAATTTGATAAATCTAATACAATGATAATTACTAATAAGAGGTGTACAAATCTATGTAAAACTGGCACAGATATGAACGAGAAATTGCATTTTAGTGCGTATAGTTAACCTGTTCACGGTACTATTTAGGTACTTGCATTATGCAACAAGTTAATAAGTACAATGAGTACTATGGATAATGCTAAAATGTCTATGCTTGGGAATAGAATCAGGAAGTAGAATAAGCCATGTTTATTGCTATCTTTTTAGGAAATCAGTCAAAATGGctattttaaaatagtaatgTGCTGTTTTCAGTTCTGCTTACTCTGTGGTCTTGTTGAATGCTAACTCACGAAAAGTTACACCttgcacatttcatttttcacatttcactaaTAAAGCCAAATTTACCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16416 lncRNA downstream 5888 24552427 ~ 24555612 (-) False LOC113542209
TU16377 lncRNA downstream 170096 24390511 ~ 24391404 (-) True G13783
TU16376 lncRNA downstream 173497 24387289 ~ 24388003 (-) True G13782
TU16340 lncRNA downstream 243080 24317682 ~ 24318420 (-) True G13748
TU16344 lncRNA downstream 291696 24266654 ~ 24269804 (-) True G13752
TU16422 lncRNA upstream 40765 24614253 ~ 24619949 (-) True G13819
TU16439 lncRNA upstream 140501 24713989 ~ 24718852 (-) True G13834
TU16983 lncRNA upstream 489980 25063468 ~ 25065486 (-) True G14303
TU16984 lncRNA upstream 489980 25063468 ~ 25065486 (-) False G14303
TU16985 lncRNA upstream 489980 25063468 ~ 25065486 (-) False G14303
XM_026939568.2 mRNA downstream 125 24552298 ~ 24561375 (-) True LOC113542209
XM_026939727.2 mRNA downstream 11012 24547264 ~ 24550488 (-) True LOC113542308
XM_026939726.2 mRNA downstream 14659 24536119 ~ 24546841 (-) False si:ch211-105c13.3
XM_026939725.2 mRNA downstream 27005 24532771 ~ 24534495 (-) True s100t
XM_026939668.2 mRNA downstream 86292 24442387 ~ 24475208 (-) True LOC113542274
XM_034307365.1 mRNA upstream 9013 24582501 ~ 24583824 (-) False lenep
XM_026940260.2 mRNA upstream 9013 24582501 ~ 24583824 (-) True lenep
XM_026939920.2 mRNA upstream 11465 24584953 ~ 24622217 (-) False shc1
XM_026939919.2 mRNA upstream 11465 24584953 ~ 24622217 (-) False shc1
XM_026939921.2 mRNA upstream 11465 24584953 ~ 24598441 (-) False shc1
TU16407 other downstream 14663 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 160745 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 321421 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 1653398 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 827268 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 827268 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 828457 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 973546 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 973569 25547057 ~ 25589703 (-) False cadm4

Expression Profile