RNA id: TU16416


Basic Information

Item Value
RNA id TU16416
length 1493
lncRNA type sense_over
GC content 0.31
exon number 2
gene id LOC113542209
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24552298 ~ 24561375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatgaTGTTACCATTTAGTAAGTCATTAGTAGAAAATGACCCTTTGCAAGGCAGTAATATTTGCAAAGGATTCTTGAAAAGCAGAATCATTCAGGCCTGTAATAATTTAAGCACAAACAAAGTAAATTGTAAGTttgtaaaaaatatcatttacacCACTTAATAAAAAAGCTGTGTAACTTTTCATAGCTTGGCCAAGCTGGTGAAATCACGCACATATCTGGACTGGCCACAGGAAGAGGGGGAGAGGATACACTTCTGGGAACGTCTGAGAAGAAACATTGCTGAAGTGGAGATGgaTGCTCCGTGAAAACAACATGTACCACCATGTACCATGTACCAAATGTTGTGAAGACAACATTTAGATTTGGATGGTGTATGCAACAAATGATGAAAATAGTCTAAATGTTTGTATACACAAAATCGTAGAACAATGCAAAGCTAATTGTCAAAAATTATTTGTGTTGTCCACTTTAAATttccagcttattattcagttattcatttgaAAGCATGTTATTCAGTATTTATCATTAAGCATATATGATATATTCAGTAACAAAAAGGGGTTTAATTTACACTGATtacattttcaattcattttttttcagaaacttctgTGTAATTTGTCTTCTttgtaatttgttaataaaactTTAACCATGCACCATAATGATTAGATGAAGCACTGACTAATTTTCATAAATAAGGAATTTGAATAATTATGAGTATATATAAGAATTCTAAACAAATATGAACATTTAAGCTAGCATTACTAGATGACCAAATAAATGCTTGTAGCTAAAACAACAGCACCAGATACAGTTCAAAACTTCATTTTGGGaatgttaaacacacatttaacaaataTCAAGCAGAAAAAAGCTACAACTATATTAATTCAATGCAATTCAAATCACTTTTCTACTTGCATGATTATTAGACTCACCAGTAAAAGTTTGGCTTTAAATAGGTTAGTTTTGTAGATAATCACCAGAGCGAAAGAATAACCTGAGGACAGTTCATGAAGAAATAAACTCTTCACAACGCTCTGTACAGAATTCACTTAGAACtggaatttaataaaaattgcatGTGAGAAGATCTACCAAGGCTGTACATGCCTCTACACAAATGTAGTTTTTCAGGATTTCTTACTTCCTTTCATCAGTTTGTTATTTCTGTTATATCtattaatgtttttcatttgctgTTATTTGCTGAGCTGGGAATATTTGTATGCataaatatattgaataaagAGTGGATTAAAACTTGTCACTTAATAGAAACCTTCTCTGTTTTTAATGACTTCATTAatcactcatctgctacacaaTAGTAAATATGATGTTGAACCCTGCTAGTTTTCTCTaagtttttatttccatttccaaAGTATTGACATGTTTTCAGTTCTGCTTTTTGTGGCTATGAAACTTCATAAATACCTCACCATAAAACTGCTATATCCACCCTCTTTATAAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16377 lncRNA downstream 161023 24390511 ~ 24391404 (-) True G13783
TU16376 lncRNA downstream 164424 24387289 ~ 24388003 (-) True G13782
TU16340 lncRNA downstream 234007 24317682 ~ 24318420 (-) True G13748
TU16344 lncRNA downstream 282623 24266654 ~ 24269804 (-) True G13752
XR_004577825.1 lncRNA downstream 312385 24237211 ~ 24240042 (-) False LOC117596842
TU16411 lncRNA upstream 17487 24573099 ~ 24578247 (-) False pbxip1b
TU16422 lncRNA upstream 58641 24614253 ~ 24619949 (-) True G13819
TU16439 lncRNA upstream 158377 24713989 ~ 24718852 (-) True G13834
TU16983 lncRNA upstream 507856 25063468 ~ 25065486 (-) True G14303
TU16984 lncRNA upstream 507856 25063468 ~ 25065486 (-) False G14303
XM_026939727.2 mRNA downstream 1939 24547264 ~ 24550488 (-) True LOC113542308
XM_026939726.2 mRNA downstream 5586 24536119 ~ 24546841 (-) False si:ch211-105c13.3
XM_026939725.2 mRNA downstream 17932 24532771 ~ 24534495 (-) True s100t
XM_026939668.2 mRNA downstream 77219 24442387 ~ 24475208 (-) True LOC113542274
XM_026939669.2 mRNA downstream 119461 24419481 ~ 24432966 (-) True tuft1a
XM_034302572.1 mRNA upstream 5888 24561500 ~ 24573488 (-) False pbxip1b
XM_034302574.1 mRNA upstream 5888 24561500 ~ 24573488 (-) False pbxip1b
XM_034302563.1 mRNA upstream 5888 24561500 ~ 24573488 (-) True pbxip1b
XM_034307365.1 mRNA upstream 26889 24582501 ~ 24583824 (-) False lenep
XM_026940260.2 mRNA upstream 26889 24582501 ~ 24583824 (-) True lenep
TU16407 other downstream 5590 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 151672 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 312348 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 1644325 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1644325 22901351 ~ 22908102 (-) True zgc:92606
TU16925 other upstream 845144 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 845144 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 846333 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 991422 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 991445 25547057 ~ 25589703 (-) False cadm4

Expression Profile