RNA id: TU16923


Basic Information

Item Value
RNA id TU16923
length 1975
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G14258
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25400756 ~ 25404306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttttattctttatttaatgctgcacaaatgttgacattttatgCATGTACAGGAGAGCATCATAATATACAGTTATGTACAGTACAAGCCTATGATCTACACCTGCACATGACTACCTATCACATTGTTATTTCTTCTACTGTAATGATATCCCTGTTATGGCGGTGGAGGATTGCACATCTGATTTCTGTGAAATTGAGAAATGAATAGCTAAAGCTAAAGCATCTCAGGCAGCACAGTCAGAGGTGTAGGGAAGGTGGTTGGAGGTCACGTGGCcttgattttaatgtttttcagcAGGCAGCCATGTGTCCAGCATGGgtttgatgttgttgatggCAGTGTCGAGGTAAAGGCCAACGTAGGGACGCAGGTATTCGCCATACACACCAAGAGCATCCAGACGTGCCTTCTCAAGAGCAGGCTGCAGCTCCTCACCCAGAGCACTGAATttaccgcacacacacacacacacacacaaacaaaaaaaacagcttgttcGCCTGGTTGCACTGTTTAAAACATATTGGAGTAATATTCAATGTTTTTTCCAAATTGATTACATTTGTGCCTATATGACTTTTCTGATCAAAGAACGAggacacactgaaaaaatataaaaataattctataatgATTTGCATTAGAATGTTTGGAAATAGTACCAACAGGTAAAATGAACCAGCAGAATTTGGAAAGAGCATTTTAGAGACCCAACAATATCCTATATTGCACACTAGAGCAGTGCTTAGGGCTGTTGCTGTTTGTTACAGGACACTGGGCTTCTGTGGTATGGCCTAAAAGCATTGTCTCAGATACTCACGCGGCCAGCTTAGCAATAACTTGAATCCTctcgttttcttttacatgttGTGCGATTTCCTTGAGCTTCTCGCCTGTGATAGTGCCCTCAGCCAGTTTCACAAGGGTGGTATGGATAGTCTCATAGGCATTAGCAAGCCTCTTGAGAAAAGTAGCCTTTAAATCGTTATACTTTTTCACAAGCTCCGCATCTGGCTCTGGcagcacacacaggcacaccGACACCCTGGAGTGCAACAATGAGAGCTAATGCCAATTTCatctggaaaaagaaagaaagaaaggaaacagaCATAAGTAGACATATAAGACATTGCGAAATTGCAAAGGGAGTATGCACCCCATTAACCACCAGTTTGGCAACTGCAGGTTCTCTCAAATTGCCCAGCTGATTAATACTGCTTTCTTACCTTGTGGTAGTATGGATCCTGATGAGATGAAACTCAAAGAGCAGCAAGACTGAAGCCGACTGTACCACCTGAGTCTGCACATACGGTCTGCCTTTAAGCCCTATATCAGTCTGACCCTGTGACCAAATAAACGtcatcacatgcacacacacacacacacacacaggtacacaactagTTATTCAAATTTTGTCTTTCTGCCTATCTTGCTCTCTCACGCATTCACAGTCACCCGTTCACttatcaaacacaaacacccacacaggaGAACCCACTGTTCTAGATACATGCATCCTCACATTCATTTGTCCACCCAAAGTCCATAGTCATTGTGGATATGTTCATGTCTGTGCAGTCACTGACCTATGACCTCAATTTACTTTATGCACTTTGCAAAGGTATAAgggatttatttttatctatgTGCATTGTGTCTTATTAAGAACTCTTTTTTGATAGCTTGCTTTTTTGCCAATAAAGTTGGTTAATGAAAGTAGAATATTGTGCTTCAAAGCTTGAACATTGTGTGTTTCTTCTTCAGCTAGTTAGAACATTTACTGTTAGATTAGCTTCCAGTACATTAGTGCTTATGTGTGACATAATTATTAGTGAAGACTGTAGAAAGTGTTGAATGATTATTTGCAAGGTAGATGGTAAAGTATTTATTTCCCAATGCCATGTTTAATGCTTTTAGACCAAATGGCATAACTGATTATTATTGTGCTGTTTGAATTGTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16935 lncRNA downstream 723 25399874 ~ 25401222 (-) True G14259
TU17178 lncRNA downstream 4781 25395487 ~ 25397164 (-) False bcam
TU17174 lncRNA downstream 11285 25388043 ~ 25390660 (-) True G14439
TU17175 lncRNA downstream 11285 25388043 ~ 25390660 (-) False G14439
TU17176 lncRNA downstream 11285 25388043 ~ 25390660 (-) False G14439
TU17191 lncRNA upstream 3772 25408078 ~ 25411719 (-) False G14444
TU17193 lncRNA upstream 3772 25408078 ~ 25429510 (-) True G14444
XR_003404619.2 lncRNA upstream 94221 25498527 ~ 25511252 (-) True LOC113545502
TU17202 lncRNA upstream 146832 25551138 ~ 25556770 (-) False cadm4
TU17220 lncRNA upstream 231798 25636104 ~ 25696835 (-) True G14464
XM_026944882.2 mRNA downstream 65336 25335601 ~ 25336609 (-) True LOC113545493
XM_034305958.1 mRNA downstream 68237 25318286 ~ 25333708 (-) False osgin2
XM_026944769.2 mRNA upstream 33561 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA upstream 33561 25437867 ~ 25487423 (-) False bcam
XM_026944771.2 mRNA upstream 39671 25443977 ~ 25487425 (-) False bcam
XM_026944870.2 mRNA upstream 117183 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA upstream 117183 25521489 ~ 25527931 (-) True rps19
TU16407 other downstream 855108 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 1001190 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 1161866 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2493843 22901351 ~ 22908102 (-) False zgc:92606
XR_004578410.1 other upstream 142728 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 142751 25547057 ~ 25589703 (-) False cadm4
XR_004578761.1 other upstream 1062505 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2841036 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2841584 28245890 ~ 28245961 (-) True trnam-cau

Expression Profile