RNA id: TU17001


Basic Information

Item Value
RNA id TU17001
length 1697
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G14315
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25099402 ~ 25101229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tCAACACagcctgttttatttaaaacttattaATATagtttatttcaaattttttttgtcacattcaTTTATCATTGTATGATGCCAAACATTTCTTTCTGTGtatcaaacaacaaaaaaatatatagataattggtatgtgtgtttatgcactACTGTGGCTGGTAAGGGTCAGTCCCCATTTAGCGCTGCTTTTGGAAGAACTCGTTGCAGAGCATGGTAATGCAGGCCACCAGGGTGACATACTCTTGGAAGTCCACAACACCATCAGCATTAGCATCCAGGTCCCTAAAAATCTTGTCCAGTGCTCCCTTGTCTTGGGTTTTCCCCAAAAATGTCTTTCAGCTCATTGGTTAGCAGATCTTTTAGCTCTGCCTTGGAAAGAGTACATTTGTCTCCCTCCTTGCCAGAGTATTTATGAAAGGCACTGATGAGCATTGCCATGCCCTGCTCCACTTGAGACATGATGACTTTTGGAAAGGaaagataatttttttaaaacatgtatatatgctttatttatttctataagcTTTATTTTCACTGAACTTGCATCCTATGAAGATTGAAGACATGTATAGCCTCATCCTCTATgtagtaaataaacacattaaagaggcagatttttttttttcagtcatgaGATGAGCACTGAAGGCTGCAGGGACCATGCAGTATTCATTTAGCTCTGCTGAACGTAGTCTATGGAACAACTGTGTGAAGATGTTTATTATCTTTAGTGATCAGTGCTTTAGCATCAACAGGTAGGCAAATGAACAAACCGGTCATTGCTGTTTCaaatacagagagagggagaatgtataattattttgaAACAGCCACTATTTGGTTTTTCTCAACAGAACAAATGTCTAACAACTGATGTGATTGAGTAAAGGAAGTTATGCTGAGCACACCcttcctaacacacacatacacacacacacacacacacacttcaatacACAGTGTGCCACGCCTAGGCCTATGGGGAGTAAGAAAGTGCTTCCTTCTGTGCTGTGACTGGATGAATTACccaaaaagaagaaataatcCAGGAGGGAGGAGAGATGGAATAATAGGCAAAAAAGAAGGGGGCTGGACTAAAGAGGAATGGTAATGTGAAGCAGTTGGTTTAAACACAAGCAAATTATGGCCAACGCCCTATCTGTTCTCTATAATTAAGAGAGTGGGTTTAAGAACAAAAGGGAGTAAAGAAAGCTGACTGTAGCCAACATTCGACAAAGCCAAATATTTCTCTGCCTAGCATCCTCCAGTGCAAGTATAGCCTCTTTTTTCTACTTCGTCTGCTTCTATGCTTGACCTAAAAACTTTTGCAGAGAGTTCACTCCACAGTCTCATAACCGTGCAAAGTCTAAGTGAAGCACATACTATATCTTACGTTGGAATAGCACTGAGAGTGAGAGGCAAGgaagatgtagagagagagagagagagagggaagaagaaATAATCCTGCACACTAAAAGATCATCTGAGAAGTATGTATTCACCGGACATAAAAAACTTTAACGTTCAGTTAGCAGCACTAATATTTACTATGGAAAATCACTagcaacactgcaaaaaaaaaaaaagcaaaacatttcagAGAACACACTCACAACAAATTCTTTCAACTTTTCTCTACTCACCTTTAGGTTTGCACGGAGAGCTACACAAGCAgaagagaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16983 lncRNA downstream 33916 25063468 ~ 25065486 (-) True G14303
TU16984 lncRNA downstream 33916 25063468 ~ 25065486 (-) False G14303
TU16985 lncRNA downstream 33916 25063468 ~ 25065486 (-) False G14303
TU16439 lncRNA downstream 380550 24713989 ~ 24718852 (-) True G13834
TU16374 lncRNA downstream 403385 24440646 ~ 24696017 (-) True G13780
TU17022 lncRNA upstream 44612 25145841 ~ 25148263 (-) True G14333
TU17053 lncRNA upstream 160811 25262040 ~ 25266696 (-) False rps27.2
TU17138 lncRNA upstream 249190 25350419 ~ 25377045 (-) False G14435
TU17141 lncRNA upstream 249190 25350419 ~ 25360795 (-) False G14435
TU17143 lncRNA upstream 249190 25350419 ~ 25355128 (-) False G14435
XM_026944707.2 mRNA downstream 46422 25035405 ~ 25052980 (-) False trim46a
XM_026944706.2 mRNA downstream 46607 25035405 ~ 25052795 (-) False trim46a
XM_034307269.1 mRNA downstream 46607 25035405 ~ 25052795 (-) True trim46a
XM_026944708.2 mRNA downstream 46607 25039182 ~ 25052795 (-) False trim46a
XM_026944847.2 mRNA downstream 291473 24770276 ~ 24807929 (-) False si:dkey-246i14.3
XM_026944856.2 mRNA upstream 160873 25262102 ~ 25266771 (-) True rps27.2
XM_034305958.1 mRNA upstream 217057 25318286 ~ 25333708 (-) False osgin2
XM_026944718.2 mRNA upstream 217057 25318286 ~ 25333708 (-) True osgin2
XM_034305963.1 mRNA upstream 217057 25318286 ~ 25333100 (-) False osgin2
XM_034305955.1 mRNA upstream 217057 25318286 ~ 25333099 (-) False osgin2
TU16407 other downstream 552565 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 698647 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 859323 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2191300 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 299527 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 299527 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 300716 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 445805 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 445828 25547057 ~ 25589703 (-) False cadm4

Expression Profile