RNA id: TU17149


Basic Information

Item Value
RNA id TU17149
length 1824
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G14435
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25350419 ~ 25377539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGTTTTCagtttgttctttattttatataaattaaagaCATTAGGAATGTTGTACCAGACATAATATATAGGTTCTGTgtgaaataaatacttttaattaGCCTATTATTATGACTGTGAAAATACTGCAATTGTCTTGTGCATAGACATAcgattttttgcatttattagtCATTTGGAGTGGAAAGTTATTACTGTGTTATTTAGTTGGTCTTGGTAAAGGACTCATAAAGAGAGGTGAGCTGGTCCTTCAGGTTTTGGGCGTAGGGGTCCAGTTTCTCTCTCAGGTCCTCAGCATAGGGAGCCAGACTCTGCTGAACCAAAGTGGCTCTCTCAGCAACCTTGGCCTGAAGATCCTCAGTCAGAGGGGCCACGGTCTTCTGGAATTCCTGCAGGTGCTGATCTACTTTCTGTTTAAAAAGTGTTCACAAAAGACCTCCTTAGCAGCACTACATTAATAAAtagatacattttaatattaattttaccATGTTCCTGTCACAGGAGAAATTAACTGGTTCTTTAACAAGTTAACACAGCCATTTTTTCTGAGAAATGTTGGGATAGGTGCCATAATAGAGAATGTCAGTTTTATCAGTTTTCAGTAGTGTAAAAACAATCCAGTGAGTGAAAAGAAGTGTTTGGAGTATTTAGTTGGTCTTGGTAAAGGACTCATAAAGGGAGGTGAGCTGGTCCTTCAGGTTTTGGGCGTAGGGGTCCAGTTTCTCTCTCAGGTCCTCAGCATAGGGAGCCAGACTCTGCTGAACCAAAGTGGCTCTCTCAGCAACCTTGGCCTGAAGATCCTCAGTCAGAGGGGCCACGGTCTTCTGGAATTCCTGCAGGTGCTGATCTACTTTCTGTCTGAGATCTTCAGTGTAGGGCTCCAACTGGGACTGCAGCTCCTTCACTTTCTCCTCCAGACTTCCCCTGAGCTCCTCGGTCTTCTGCAGCACGGTAGTTTTCAGAGCTTCAGAGTCAAAGGACTCAGCGTAGGGAGCCACAGCTACTCTCAGCTCCTCCACTCTCTGCTGAATTTGGGTCTTCAGATCATCAGCATAGGGCTCCAGTTTTTCTCTCACAGTGGTCAGGTCCTGCTCAAGACGCTCCTTCAGAACTTCAGCCTCCTTGGTGATTTTGGTCATGATGTCCTGGGCCAGAGGGTTCACTTTGTTCTGGAGACTGACAGCATACTGACTGGCAACATTAGCCCCTTCTGTAATTCTAGCACTATGaagttaaaaaaggaaagatacatatgtaagaaaaaaaggacTTGACACACAATCAAGACAGAAAACACAGTTCTGTTGACTTACTTGACTTCCTGTCCCAGTTGCGACTCTCTAATCTTTTTGAGTGTGtcctcagcagtgtgtgttgccTCGGCAACATAGTCCCAGAAAGCATCAGTCAGTTGCTCCAGCTGTGGTTTGGGTTCATCAGCATAGAACAAGTTGGCATGGCAACCTGGGGGCACATAAATACATATAGTTTCTTGGCCCTATTATAATAATTGCCTATTTGGGCCTTTTTGGGCCTTTTTGAGGTCTTTTTTCaagctttgtgataatgtctagTAAAAATGCCACTGACAACATTATTATCAATGAATGGAGACAGACATttcataaaaatcataaaatcttTACCTGTAAATGCCACAATGGCAAGCACCAGGAAAACCTTCATCTTTGTTGTCTTTAGCTACAAACACAAAGAAAGTAGATGCACTTCAACTTCTATGCAATCaacatttagctttttttaatcagtgttcTCCAGCTCACCTCTTTGTGGATATTCCTTGCTGAATGTTTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17053 lncRNA downstream 83723 25262040 ~ 25266696 (-) False rps27.2
TU17022 lncRNA downstream 202156 25145841 ~ 25148263 (-) True G14333
TU17001 lncRNA downstream 249190 25099402 ~ 25101229 (-) False G14315
TU17003 lncRNA downstream 249190 25099402 ~ 25101229 (-) True G14315
TU16985 lncRNA downstream 284933 25063468 ~ 25065486 (-) False G14303
TU17174 lncRNA upstream 10998 25388043 ~ 25390660 (-) True G14439
TU17175 lncRNA upstream 10998 25388043 ~ 25390660 (-) False G14439
TU17176 lncRNA upstream 10998 25388043 ~ 25390660 (-) False G14439
TU17178 lncRNA upstream 18442 25395487 ~ 25397164 (-) False bcam
TU17182 lncRNA upstream 18442 25395487 ~ 25487400 (-) False bcam
XM_026944882.2 mRNA downstream 13810 25335601 ~ 25336609 (-) True LOC113545493
XM_034305958.1 mRNA downstream 16711 25318286 ~ 25333708 (-) False osgin2
XM_026944769.2 mRNA upstream 60822 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA upstream 60822 25437867 ~ 25487423 (-) False bcam
XM_026944771.2 mRNA upstream 66932 25443977 ~ 25487425 (-) False bcam
XM_026944870.2 mRNA upstream 144444 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA upstream 144444 25521489 ~ 25527931 (-) True rps19
TU16407 other downstream 803582 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 949664 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 1110340 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2442317 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 23711 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 23711 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 24900 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 169989 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 170012 25547057 ~ 25589703 (-) False cadm4

Expression Profile