RNA id: TU17174


Basic Information

Item Value
RNA id TU17174
length 2597
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G14439
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25388043 ~ 25390660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTTGATCCATTACCAATTTTTATTGCATACAGGTTCAAAAACAGCAGTCAGACATTTATTTGCAGATTTTATGATTGAAATGGTGGACAGTATTTCATGAGGTTTGCTTGTACTATCAAACTAATTTTGTAAACGTGCTCTCGTCCCAAAGTGCACACCTATATGCAATGTAGAAGATTTGAGAAACATGACTAGCCAAGGTAGTTATACTATTGCACTTTAAGAAGTATTATTGAGTGGATTAATACTGAGAAAGCCCACATGGTGATTAATAAACAGTATTCCATGTTTCAGTAAGAAGCTATGTCCAGTTCTTTCCCTTTCTTGTTTACCTATCAAACAGTGAAGACTATAAAGCATCAGTAACAAACATTATTAGACTAATAATATCCCCACTTGCTCTCCCAGTATGTGGTACAACGTGTTATAATTGGTGGCTTTACAGTGGGGCAGGGAGAGCAGCTGAAGCCTCTTTGATCTTTTCCATGACAGTCTGGAGCTGTTCACGGATCTTCTCAGTGTAGGGATTCAGGAGGCTGGTGAGCTCCTCAATGCGGCCCTCAAGGGAAGTGCGCAGGCTGTCGGCAGTCTGCTCCAGCTGCTGCTTCAGCACACTGGCCTGTTCCTCCAGCTGCTGGCTCACACCCTGAGACTGGCTCTGCAGCAGCTCGGTGAGGGTGCCCAACTTCGTGCTGATGCCCTCACGCACCTCCTTTGTGTAGGGCTCGAGGTGGCTCTTCACTGCCTCAGCATTTTGCTGGGTACGGGACTGCAGCTCACCCAGGTAAGTGGCCACAGTGCTGGAAAAGGTGCAACAATAAAGGAGTTAATGTTTTCAGTTATCCATTTTGAACAAGGCAACTGGACTTGTGTTTTGATGTGTCTTCAAGATAACTTAGTTCCAGTTACTGTGACTTGCTAGAGATTTAAGACACCAGGAAACATAGATTGTCCACCAAgcaatatgtattatatatacaatttaCTGAAATTGCAATTTAAATTGCACTTCAAATTGCAGCTCCTGATTCATACTCACTTGCGGATCTCCTCGGTGTCCTTGCCCAGGCGTTTCTTGAGCTTACGAGTGTAGGTGTTGATACGGTTCTTGACGTCATCTGCATTCTGATCTATCATGGACTTCAGCTCAGTTAGGTACTGGTTGGAGCGCTCCTTGGCATCGAGCATGTCAGTCTGCAGCTTGCTGATCAGCAGATCCATATCCTGCTTCAGCTGGCCTGAGGCGTCCGTTGCATAGGGGCCCAGTTTGGTCTCGATGTCCGCCCTGTACACGTTCAGCTCAGCCATGGTGTTAGTGATCAGAGTACTAAAGTTCGGAGGAGATCCAGGAGATCAGATACAGGAGATCAGATCAGAGACAATGGAATAGTTGTGGACAATATTGCAGAAAAGCTTTAGGGGCTCTTATTTTAACTTGTTGGTAACATTATATGATTCTTTTACAATATGGGACATGCAGCTTAAATGAATAGACTTGTACAAATCTTCTTCTACTTGTTCATGGTTCTTTGTGCTAACTTACTCAAGTTCCTTGCTGAGCTGGGAGCTCTTCATGTTCTCCACCATACTATCAGTATGAGTGTTAAGCTCTGAGATGAACTGCCAGAATTGATCCACTGTCTCTTCCCATCTGGCCAGAGGCTGGTCAGCCTGGGGCACAGCACGAGCATGGCAGCCTAAAAGATGAAGAAGAGTCAGAAAAACATGGCTGAGCTACATGATGGCTATAGTAAATGAGGTCTGGTGGAACAAAAGCGTTTTATCAATTCCAATGCATGTGACTCCTTGCACACTTTAATCTTTTGGCCCAACTCTAAGAAATCTGATTAAACCCATCAAGtttctttaaatatgtaaacatgtaaatcaaTGACAAAGATGACAAGAATGTCAGTAAGGTTTACAGTATCTTCCTAACTGCTTTACAGTTTAGCTAGTGTGCATACTTCTGCTGCTTGCATAGAAAAGCCAAGGATAAATAAATGAGGAATTTTCAACATACCAGCAATAACTGCCAGAGCAAGTACCACTACAACAGCCCTCATGTTGATAGACAGACAAGAACACCTGGAGATAGAATGAGAGTCAGGAAAGAGAGTTCATCTTCATATTTTGGGGAGGAAAGGTTGTAGTTATTCAAAACTGCAATTTCAATATCatttttgaattattataataaaatatacaattaagATGATCTCAGTCAAAACAGTAATTTAGTTTGTAGGCTTTTAAAAGAGAATGCAGAATACAGAGAACTTCAATACATAGTTTGCTATATTAATCACATGCACatccattttcatttcttgtCTAAAATTGATCTAAAGCATTGCAAGTGATTATTAAGTGATGGTGTAGAAAAGAGCCTATGAGCTGTTGTATAacaaatgcaaagaaatgtagtaatgttattattaaGAATAGTTCCCGTTGTTGAACACTGCTGCCCCTCTCTTCTTCATACTCACCTGAGAAGTCCGCTTTGCTCCGTGTTGTGAGCGGTAGAGGTGCGCGCGCTTTTTATACTCCCCGGGCTGCGTTCACAATAGCGCTGATCACGAGACTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17150 lncRNA downstream 10504 25353418 ~ 25377539 (-) False G14435
TU17138 lncRNA downstream 10998 25350419 ~ 25377045 (-) False G14435
TU17145 lncRNA downstream 10998 25350419 ~ 25377045 (-) False G14435
TU17148 lncRNA downstream 10998 25350419 ~ 25377045 (-) False G14435
TU17149 lncRNA downstream 10998 25350419 ~ 25377045 (-) False G14435
TU17178 lncRNA upstream 4827 25395487 ~ 25397164 (-) False bcam
TU17182 lncRNA upstream 4827 25395487 ~ 25487400 (-) False bcam
TU17184 lncRNA upstream 4827 25395487 ~ 25421218 (-) False bcam
TU17185 lncRNA upstream 4827 25395487 ~ 25421218 (-) False bcam
TU17187 lncRNA upstream 4827 25395487 ~ 25487400 (-) False bcam
XM_026944882.2 mRNA downstream 51434 25335601 ~ 25336609 (-) True LOC113545493
XM_034305958.1 mRNA downstream 54335 25318286 ~ 25333708 (-) False osgin2
XM_026944769.2 mRNA upstream 47207 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA upstream 47207 25437867 ~ 25487423 (-) False bcam
XM_026944771.2 mRNA upstream 53317 25443977 ~ 25487425 (-) False bcam
XM_026944870.2 mRNA upstream 130829 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA upstream 130829 25521489 ~ 25527931 (-) True rps19
TU16407 other downstream 841206 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 987288 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 1147964 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2479941 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 10096 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 10096 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 11285 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 156374 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 156397 25547057 ~ 25589703 (-) False cadm4

Expression Profile