RNA id: XM_026944770.2


Basic Information

Item Value
RNA id XM_026944770.2
length 4392
RNA type mRNA
GC content 0.44
exon number 16
gene id bcam
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25395487 ~ 25487425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAATCAGCGGgtgcgtgagtgagtgagtgagtgagtgagtgagtgtgtgcgtgcgtgtgcgtgcgtgtgcgtgtgtgccaGTGCGTGTGAGACAGACGCAGAGTGAGATCGGACAGCCGAGCGGACTTCACAGAGCCGAGTTTCCAAGAGCAGAAGGAAGAGAAGTAGTTGAGAAGTGATCATGGACAGGATGATATCAGGACGCGTGTGGCTCGCCTGCGTTTCACTCTTCTTCCCACTGCACGtgtGTCTGGCTTTCGTGTCAGTGAAGGTGACACCTACAGTGGATGTGATTATAGGAGAAACCGCCTGGCTGCCCTGCACCTTCTCCACCACTGGCAACATGACCGTGGTCCAGTGGTTCATTGAGTCTGCAGGCACACGGAAGCGTGTAGCTTTCAGGTCATCCAAAGACGACGGCCTAGATAAAGACACACCGTTAACAGACCGTGTCACCATGGAAACTGACATGACCCTGGTCATCTCTCCAGTAAAGGTGATGGATGAGAGGAGCTTCTTCTGCCAGGTGGACGGAGGACCCGTGGGTACCGCAGAGGCTGAGACCAAACTCAAGGTGTTCTATGCTCCAGAAAAGCCAGTGGTGTCTGAAAATAAACAAGTCATTCCTGTAAGCCCAGAAAACCCAACTGCACATCAGGTGGGCAAATGCACCAGCAGCAATGGTCACCCTGAGCCTCGTATCATCTGGTTTAAAGACTCCAAACCTCTGCCAGAGGTTGCAGATCCTAAAGACAagtTATACATGGTCCCGGGTGTGGTGAAGGAGTCATCAGGTCTCTTCACGGTCACAAGCACTCTGTACATCCGGCCCAATAAGATGGACGCCAAGTCAGTGTTCCACTGCACCGTGGAGTACAGGATGCCGAACGAGGAGATTAAAAAGGAGAACTCGGAACCTTTCAACCTCACACTGCTCTACCCAGCAGAGAATGTGTTCTTCAAATTGTTGAACACATCACCAATCAAAGAGGGAGATGAGGTTCGGATGAAATGTGAGACGGACGGAAACCCTCAGCCTCAGTTCGAATTCTCCAAAGACACCAATTTCGTTACGCAAACAAGTGAGACGGGATTGCTTATTCTGCGCAACGTCACTCGCAGTGACTCTGGCACCTACAGTTGTGAGGCAATGGACTTTGACTCTTTGTCTGCTGACCTGACCAAGAACCTCGCCATCAACGTGCACCaTCTGGACCCAGTGTCTGTGGTGCCAGCCAGCCCTTTGATGATAAGTAAAGGTGATCCCATTGAGCTTCAATGCAAGACCAGGTCTTCTGATGAGTACACCCTCTCATGGATGAAGgatggTAAGCAGCTGTCTCAGAAGGGTGTGCTGGCTCTGCAGTCTGCAAATTTGGACAATGCTGGCgagtatgtgtgtattgcaTCGGTCCCTTCAGTGCCGGGCCTGCAGAAGCAAGCTAATATCACAGTTATCATCTcagGTCAGCCTGAGATTGATGAGCCCATGACAGGAAAGGTTGCAAGGCAGGGAGATAAGGTCACTCTCAGGTGTTCTGCTCAAGGCTATCCTGCTCCACAGTTCACCTGGAAACCCTCTGgcaaagagtcatTAGAAATAAATGGGAATAAGTTCACCAGCACAGTCATCCTGGAGGCCACAGCTGCTGTTCTCAAAGATGGCGTCATTTGTGAGGCAAACAACGAGCACGGTGCAGACAGCAAGAAGTTCACAGTCGAAATCCAGTcagACAACACAATCGATTCAAATGGCGGTGCACGAGCTGACACTCAGCAGGGTGGCTCCAAAGGAGTGGTGGTCgctgtgttggtgtgtgtgctgctgttgcTCCTGCTGGTGGCTGTTCTTTACTTCTTCGGTAAGAGGGGCAGGATGGCCTGTCgcaagaaggagaagaaggacgTTGCATCTGGGGAGGTGAACAGTGACATTGTGGTGGAGATGAAATCTGGTGAGAAGCCCAATGAGGAGTCAGGGCTGCTTAATAAACCCCATGTAGAGCAGTGATATGAGAGAAGAATGTGGAGGAAGACAAATCATCTGAGGAATTGAAGAGCAGGAGGGGTGCTTgagtttttttggtttgttttttctgaGTGAGGCACCAACCTGAAGCAGTGGGGCGGATATATTTGAGCTGTAAATTTTGTTTAGGGTCGGGTTGGGGAGAGGCAGATGGGGTTAGAAACAGTGGGTGGGGTTTGACATAGTGGTTGGGGTTAAGGACAGTGGGtttgaacaatttttgtaaaAGTGGTCTTCTCTGTTTTTAAGGGGGGTGGggtaaattttaaatgttttttctgcTAAAGTGAGAAACCAATCACGCAAATCATTGTCCACTGATCATGACTCTGCAGACTAGCTGTAGAAAAGAAAGCATCGGAAACTCAATCCAGCACCGGGTATACTGCCAAATTTCCAGATCTTTTAATTAAATCACTGTGCCACTGGATTGATCTTTAGCCTGTGCACTCCTCTTTTCAACTTAGTCTGCATTAGACACTGCACTTACTGTCTGTTCTTACACAATTCTTCCCACTGTAAGTGCATTGACACCTGTTGATCATCTTTAAAAACACTGCTCATAAGCATACACTTTGTCCTGTACAAATTGCCTGACTGTGGACTTGCATGCTACTGAAAATAGcctgtctcttttttccctaCATTGTATGTATAgccaaatgttttcattttttttctatctgtaTTACATGGTAGCTTCCTATACAGCACTGCCAATGCATCTGTAAAGTCTGAGCAAACCAAATGCTTGGAGGTGCCAAGGAGCAAGAGATTAGAAAGTAAGAAATACAAGGTCATGCCACTGAATGCTCTGAGATGTACAGGCCAAAAAAATGagaagcttgtttttttttttttttttttttaaacctgtgtCCtcgcaaaatgtttttttttttttttttcctgaatctGGATGCCTCAGTGCAACCTACTCATGTTCAAAGAGTTTGTCGTTTGTGTAATTTAAAAGGCCATGGAGAGAAATACAGAAGTCTTCTCTAAGTAGCTAATTAGACTTTAAAGCTCGGTTATATGTCCTTTAGTCCCAGGAATTTGTCACGAGGCTGCACCCATGCACAGTATTAAGATTACGACATCGTCTGTTTCTGTTGGGTGACTATGTGACAAGTATTAGaaattttatatgtaattagaaaaaaagtaataaaacatgaatttttCCCAGATGTAAAACTGCAAATGGACCCAAAAGAACCTTACAGAGCACCACTGCTGGTACAGACCATGTTCCAAACCATATTAACTTCTACTGATTCTCATCACTCCATGTGCCTTTCTCAGAActtctttatttgtatttatgggACTATGTCTATTTAAATGCCTCCAGCTTCTCACTCAGTTCTAGTTTCATGGCCCTGTACAAGTAAGGTGTAAGTAAGTAGTGAAGAGTCTCGTCAGTGGGAGTAGTTATGGAAATGCTAGGATTATGGCCACACATCtagtttaattttcttttttttttttgttaaaccaaaAATCTAAAAGACTGTAAAGGTAATGAATTCTCTGTCATATTAGGAGGCTTCATTCTCCAAAGCTCGACCCATGTCACTGCTGTTATGTCTGTGCTATATTCTTTGAATGTGATTACGTGAatatgtcacacacactcacacacatacacacactctgtgctTCTTTCCCACAGGCTCTAGCAAAGCAGAGTAATTATAGATGCTCTAACTGATATCACATGTGAGTTAACGGTAATTGAATAAGGCAGGTTAAGGAAGTGTGTTTATACTATATGTGAACATTTTGATTTGAATATGAACAACCTACTGAGTCGTGCATGTACATATTATCCTGTAGTTTGGTATGTATGTGCTTTCATTAGCTATATACACATACTTAATGCTTTTCTGAATATGGGGTTATAAGGCTTACCCTTTCTCAGACACTGATGCCCATGTTAATTCCATTACAAAATGTTGATATACAATAAGctgaatgttatattttatatttaagttagattttttattatttgatttttccAGCTATAGCGTCATGCCAATTTATCACTGAGATGTGGTCGAGcattatagccattttttaaTATCGTAAAAAACTTATTTGTGcaagttctttttttaagaaacaaTGACTTGTGGTTAAACTACTGAATTATTGCTTCTATTTTACATCTGTCACGTTCACTGGTCTTGCAGGTCAGGTTTAGATATCTTGTCATGAATTATAAAGTATTGTGACTACTTTCTCCTTTCTGATGTATATTTTGTGGTATTAGTTGTGAGCTTTGTAGCCTGTTTTTCACCTTTTGTGGAGCTGTGTAGAATTtatactgacaaaaaaaatttccacACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17193 lncRNA downstream 8357 25408078 ~ 25429510 (-) True G14444
TU17184 lncRNA downstream 16649 25395487 ~ 25421218 (-) False bcam
TU17185 lncRNA downstream 16649 25395487 ~ 25421218 (-) False bcam
TU17191 lncRNA downstream 26148 25408078 ~ 25411719 (-) False G14444
TU16932 lncRNA downstream 33561 25400756 ~ 25404306 (-) False G14258
XR_003404619.2 lncRNA upstream 11104 25498527 ~ 25511252 (-) True LOC113545502
TU17202 lncRNA upstream 63715 25551138 ~ 25556770 (-) False cadm4
TU17220 lncRNA upstream 148681 25636104 ~ 25696835 (-) True G14464
TU17270 lncRNA upstream 270651 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 270651 25758074 ~ 25763495 (-) False fxyd7
XM_026944882.2 mRNA downstream 101258 25335601 ~ 25336609 (-) True LOC113545493
XM_034305958.1 mRNA downstream 104159 25318286 ~ 25333708 (-) False osgin2
XM_026944870.2 mRNA upstream 34066 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA upstream 34066 25521489 ~ 25527931 (-) True rps19
XM_026944806.2 mRNA upstream 63707 25551130 ~ 25705515 (-) False cadm4
XM_026944807.2 mRNA upstream 63707 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA upstream 63707 25551130 ~ 25589702 (-) True cadm4
TU16925 other downstream 33561 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 33561 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 33561 25401945 ~ 25404306 (-) False G14258
TU16407 other downstream 891030 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 1037112 24391530 ~ 24400755 (-) False si:dkey-92i15.4
XR_004578410.1 other upstream 59611 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 59634 25547057 ~ 25589703 (-) False cadm4
XR_004578761.1 other upstream 979388 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2757919 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2758467 28245890 ~ 28245961 (-) True trnam-cau

Expression Profile