RNA id: XM_026944806.2


Basic Information

Item Value
RNA id XM_026944806.2
length 2813
RNA type mRNA
GC content 0.48
exon number 9
gene id cadm4
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25547034 ~ 25705515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGACAGTTGGCAGCAGTGTGAAGCAGACAGTGGAAAACCCAGAGCTTCCCGCAGCCGCTCAGTTCAGCGCAGATCTGAGCAAAGTGGCGTTAGTATGTAAGATCCAGTCGATTCCAAGCGACGCTGGAGTTCAGAAAGAAACTTCACCCGTCTCGGGATCCGACTCGAAGAGGACTTAACCAGGGAAATAGAGCTGAGATGGCATTTTGGTCCGTTTGGAAGTACTGCGGTGTATTCTCCACACTACTCCTGCTGTCGTTCCTGCGCACAGcacGGGGCCAGGCGGTGCAGGCTGAGAACGTGACAGTTCTCGAGGGCGGCACAGCACAGATCTCCTGCCGCCTACAGAACTACGATGGTTCCATAGTGGTCATCCAGAACCCACGCAGGCAGACGCTGTTCTTTAACGGCACACGAGctcTGAAGGACGAACGCTTTCAGATGGTGCTGTTCACGCCACGCCTGGTGCGCATCACGCTGAGTAATGTGAGTGTGTCTGATGAGGGTGGCTACTTCTGCCAGCTCTACACGGACTCCACGCACCACCAGGTGGCCACGCTGTCAGTGGTGGTGCCCCCGGAGGTGCCCACTGTGGAGGTGAAGAGTGAGGCGGTGGAGGGTGGAGAGGTGGAGCTCACCTGTGTGTCAGAGAGGAGCAAACCTCCCGCTACGCTGCGCTGGGTCCGAGACCGACGAGAGATTCCTGGTGTGGTGTCTCAGCAGGAGAACGGAAAGACAGTGAGCGTGTCCAACACCATACGGCTTCCTGTTGAGAGGAAGGACAACGGTGCTGCTCTCAGCTGTGAGGCTTCCCACCCGGCACTCGTAGGACAGAAAAGGGTTCGCCATTACCGCCTGGATGTCCACTTTGCCCCCACGGTGAGGATCAGCCCTCCACAGGGCATTCTGCGAGAGGGGGACTCGCTCAGCCTTACCTGCTCGGTCACTGGAAATCCACTGCCACGGGACATTCACTGGTCGCGAGTGAATGACACTCTGCCTGAGAGGGCGGAAATTTCCGGCACTACCTTGGTCATGTCACGCCTTAGCCAAACACACAACGGCACCTACCTGTGTCAGGCACACAATAATTACGGCCGCGCAGCTGACCAGTACACACTGCTGGTGTATGagaatgtgtctgtgtttgtcagtcCCACCTCCCATCCCGTCACCTCCTCATCCTCCCTCCCATGGACACAACCAGaccCTGGAGCAGTGGTGGAGACTCATAGTGCGGTACCGTATCCAATCATAGGGGGTGTGCTGGCTCTGCTCGTCTTCACCATCATCTGCGTGCTCATTGTAACCATCTGGTGCTCGGTGCGACAGAAAGgttCGTACCTCACGCATGAGGCGAGTGGCCTCGATGAACACGGGGAGGTGCAGGAAGCATTTCTCAATGGGAACGACACAAGTCAAGGCAAGAAGGAGTATCTACTGTAACAGCTCCTGGAGGATGGCCATggagcgcgcacacacacacacacacacacatacacacacgtacacacatatGCCTGGTGGAAAACCACTATAGCAGTGCCATGTaaaagggagggagagggagagagagagcatcagGAGAGAAGAATAGGCTTAATTAAGATTGAGGAAGAcatcagaaacagaaaaagcacCGGccctacacacctacacacactttctgttaAGCTGTAAGTAGGAGGCAGAACCGAATAGCCATAACTCTCGAGCCAGCAGAGCAGCAACGACTTACAAACTATCGACTTTGCCGATGCAAATAGAAATAGAGCACATGAAATATAAAGCCGTCTGATTACAGCATCGAGTGCCCTCATATAGTGTTTACACTGGGTATTCACCTGGTACTGGACCTCCGTCATATTCCATTATCAGGTGTTTagtaacccacacacacacaaagaattgCCTCTTATCATAACCCTCCTGAGGTATAGTTCTCTGATCCTCTCTCATCTTCTCCATGTCTCTTCTGCTCTGCTTTCTGTcgtctctccttccctctctctcccctgtttTTGCTCATAAGTAAGCATTTATTACATGATTCAGAGGAGCTAGGAGGAAGCATAATTACACTGAAGTGTTATTGGGAACTTGTAGAAGAAGACAAGGTTTAAAGGAGGAAAGTGTAGTAAAATAATAGTCAGAATATGTGTAAATGCTATAGACCTCTTTATatgtatagacacacacacacacacacagagagatacacacatgcagcaaacaggcacacactgacacaatgaAACATATCTCTTAAgtcattatttgtataaaaaattcagtaaattaaattaatcttttAAGAAGTGAACAAGAAGGTTTACTTTTGAGCGCATTACCAAGCGATGCTATTATACTAACACCGAACATTAGCCTAGagaaatatgaacaaaacactGTTGcgcaatctttaaaaaaaaatggagaaaatgagaaaaaaatatatatatttcatttgtcTTTGAAAGATactttgttttatattcattattattttgactatgattgttgttattgttaatataattgtaaatgttttaaattgtaTAAACTTCCCATGTTTTGTTGCAACTCTAGAACctgctgtctttctttctgcttttacGCCGCTCTTTTAtccttttttcagtctttcttGCTCCTCCTCTCATCGTCTATATGCCGAATTGTGTGTCCTTCCTTCTTGTCTTTTACTTATGATTTTTTAATAGTCTTCACGTCACTGTTGATATAGCTAACCGTGTTTCTTTATAGAGGAAAAGTTACAGAGCacgacaaaataaaacatactcCAAAATCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404619.2 lncRNA downstream 39878 25498527 ~ 25511252 (-) True LOC113545502
TU17193 lncRNA downstream 121620 25408078 ~ 25429510 (-) True G14444
TU17191 lncRNA downstream 139411 25408078 ~ 25411719 (-) False G14444
TU16932 lncRNA downstream 146824 25400756 ~ 25404306 (-) False G14258
TU17270 lncRNA upstream 52559 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 52559 25758074 ~ 25763495 (-) False fxyd7
TU17272 lncRNA upstream 52559 25758074 ~ 25763764 (-) True fxyd7
TU17274 lncRNA upstream 116234 25821749 ~ 25823635 (-) True G14514
TU17275 lncRNA upstream 129489 25835004 ~ 25837637 (-) True G14515
XM_026944870.2 mRNA downstream 23199 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA downstream 23199 25521489 ~ 25527931 (-) True rps19
XM_026944771.2 mRNA downstream 63705 25443977 ~ 25487425 (-) False bcam
XM_026944769.2 mRNA downstream 63706 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA downstream 63707 25437867 ~ 25487423 (-) False bcam
XM_026944831.2 mRNA upstream 7951 25713466 ~ 25722244 (-) True si:ch211-79k12.1
XM_034309064.1 mRNA upstream 52540 25758055 ~ 25764694 (-) False fxyd7
XM_026944866.2 mRNA upstream 52540 25758055 ~ 25763701 (-) False fxyd7
XM_026944864.2 mRNA upstream 52540 25758055 ~ 25763561 (-) False fxyd7
XM_026944720.2 mRNA upstream 67077 25772592 ~ 25840943 (-) False nrp1a
TU16925 other downstream 146824 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 146824 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 146824 25401945 ~ 25404306 (-) False G14258
TU16407 other downstream 1004293 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 1150375 24391530 ~ 24400755 (-) False si:dkey-92i15.4
XR_004578761.1 other upstream 761296 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2539827 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2540375 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 2545541 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 2549980 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile