RNA id: TU17220


Basic Information

Item Value
RNA id TU17220
length 4421
lncRNA type intronic
GC content 0.38
exon number 2
gene id G14464
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25636104 ~ 25696835 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaaagttaatgctgcaTTTGTGCAGTTGAAAACACTGTCTTGTTATGGTTGTTGAgaaattacatatttttccaAGGTTAGAATTGAGATATAAAACAGTGTTGCTTTTGACAGCTCTAATCTACCACACtattcctttttaattttttttactcgtTTGTTTTAAAATCTCACCCACAAATACCATTAGGGTACCAAAAACCTCTAACTGGAGCTGGCATCCTATGGGAAAAGCACGATTCCACTTTTCTGGTGGCCAAAAATAATGttcagtgagaaaaaaagctcacagagagcaaATGATCAAAAGCTATCCTATCAGACTGCTTCCTGTAATTAATTTGatcttttttattaatgaacaagtTTTAACTTGGCACTGGATCGTGcgtgagaaagaaagtgaaaaccCACTCATCCGCATTCAGCAGTCAGTGGCTGGTGGATGAGAGAAAAGATAGGAAGAAAAAATGGCATCCAAGCGAGCCATctccagaaagaaagaaggctGGGGGGAGAAATGCTGCACAtgcagaggagaaagagagttTTGCAAAAGTAACCCTCAACTAACATAAACAATTCAGCCAAGAGGAAAGAGTGAGTTAGAGGGGAAGAAGAAAGCAACACATGTCAGACAAATGGAGATGGAGAGGCAATTGGTCACTGTATAGGTGActacagaaaacaacaaaaacatgaccgtgacacacagagagcagaTGATCAATGGGGCATTTTTTTCAAGCCACCTACTGTCCACTGAATCTGTCGCTGTGAGTGGTGGGTCTAGgatgaagcacacacacacacacacacacactcttcgcCCTTTCTGCTCTTGACAAAACTCCCACTCAAGTCCCCAGCAGcatgttgtataaatgagaattGCAACACTGATATCCTCGGCCCAAAgccagcagaaaaaaaagagcattggAATGCTGCAAGAAATTTTTAATCTCCTTCAAAAGTGCTCCCAGTCCCTCTAATCAAAGCGCTCGCTCAGTTCAGGGGTCAGACAAGCTGAAAAAAGCCACTGAATTCAACACTGAACCATCAAACATTAGTCATGCAGGAAATAAAGATGGATTAATGCATAATGACTTTGTTGACATTACACTGAGATGCACACCATCTCTATGAGCTGCATGTAGCTTCTCTCTCCTGTTCTGTAGACCATCACTGATGGATCGACTGTGATAGACTATATTACACTGAAGTATCATTCTGAAAATGAAGACTCCTACATGATCACATTTCTATGAAAAATACCACGTTTTACTCCTTAAATATCCATAGCTCCAGAGTACGTCCAAGatgaatatttttcttttcttttcattggcCACCAGTCCAAACCATTGCACGCCTGTgcatattaacttttttttgtaatatactgtatacatgctTATATTCATAACATCCAGTAAactccatcatgttttatagCCTACACAACCATACTGCATTCACAGATcgaaattattttaatgaaaaaagaacTTAATCTCATCAAAAATGTGTACAAGCGAGGGTGGAGTGGTATTATTTCATTCAATTTCATATGAAATCCTCACGGGATACAGATgcaaaacagtacaaaaaatcAACTGTACTCTCCCTTGTAGCTGCAGGGGTACCATCAaaggtacatcttttgtacctttggtatgtatcttttacctgagaatgtgcatgtggtgtaccttttaattagcttttagccTAAAGCTTTGCAAGTACATCTACCTTAAATTTATCTTAAAGGTGCACTATGTTTACATTTGCAGGTAAAAGATGTGCAAACACTAAATGTGCAAAAGATGTCCACTGATGTATCACACCAGCGACAACGAAAAGTACACCGCAATACCTTTATTTTCTCATACAATGTAAATTCTAATGAATTTGTGAGACCATGCATGAAAAAGCTACACTGAGTAATGGATAAGACCCATACTTTCaattatgtgtgttttcctAGACTTTTTTGACGCTTGAATATGAGAGGTATTAATAATATGATGAGCATGAATGagtataaaaaaggaaaatatttattCTCGCAGTAATTCAACTgaaaatatgtcatttttatattatcCACAGTTGCCTTCAGGTCATATGTTTTCTCAGCAGATACACACATGAAACAGTCAGTTATTAGTATTGGCCATGGATTTTCATAGCACTACATCTCTAATTCCAGCAGTGTCTGCCCTTTCCCATCCCATCATCCTATAAACAATGACTCAAGCGAGTCTTTGATCTTGCATAATTAGTAAGCGGTGAATAAATCTTCATTAACAGTAATTAATTCATGccatggaaaaataaacatcaagAAGTTGCAAATAAATCCTCAATTAAAGCATCCTAAGCATGACAGAAGGGGCGAAGCGGTTGCTGGCCAAAGTCCACAGCCGTATTTGGCATGATTTAGATCTATTTTATTATCCGGGAGGAGAAGAGACGCAGAATCAGAAGGTCAGAGTATTGCtcagggaggaagagagaactTCGGTTCCAGACTGGAAGAGATTACTTCCCATAACAATGGATTATTTTTGCTGCGATTGCATCGGTTTAAGAAATGGCATTCGGTCAGTGTGGAGATGTCCCTGTCGGACGACCTTGACGATGGGCTGGTGCTGCAAAGTGCCTCCAGGCAATTCTTAGCGAAAAGGAGgataaaaaaaaggagaataataataagaatagaCTCTTCTAAGTGAATTGCCTTGTATGTCTGGACTGGAGATTTGtggcttctctttctctttacctCAGAGACCAGCCTGGTACACACAGTCATCTCTGAGCACAtctaataaataatcatatCTCCCACAGACAGCTGAGCCACTGTCACGACCGGGTCTGCAACTCCTGAAGTTGCGCACTACAAGTCCAGTAATCCTCAGCCCGCAAACATGACCTCCAGTCAGCCATCTATTCCTGTTCACAGTCACACGATTACTAATGGAGCTGTTCAACAATCACACTCGCTGCTGGAAATAACACAGAATGCCAACCAGACATTCCAGCATTGTATCTGACACAATTCCAAGCTTTTATTATCTGCCTATCTTGAGTAGTGTTTAACCATGGCCACATGTTTACCGTCTACTTTATGTCTGTTTGCCGACCGCCTGACCATTTGTCTCACGTTTGCCTTAGCCCTTTGGTTTGCTTGCTatattgattttaataaaaccagaaaacctgCATATCCATCTGTTCACTTCATGACATCCACACTGTCCATATTGAGGGCTTACAACCACAGAGCAAGCTGATGTACtgacagacttttttttctggcaCAGTTTTCTTGAGAAAATGGTAGACCATGGAAGAATCAATGTCTCTAATGCCAGATTGTTTAAAGTTGCATGTTGAAGAGGTGAGGGTCAATAGACACAGTAGGTGATGCTATTTTATAGACTGGAGCTGTAATTGTTCACCTCATGAATTACAAAATTAAGTGTGGTTTGTATGTATGTCATTTGAAATGTGGCTTATCATACAGTTTTTGacatctgtgaaacctaacacaTCTAAATGTTTGTCATCGTCATTTTGTCTtcagggtatgcaaacttttgcactcgactgCTCTGGTTTGCCCAGTCTAACAGCAACGATCAAGTTTCTGTTTCAATCCTCAGGAAAGGCATGTGAAAGTACTGGGATGCTAGGTTAGCTAGAAATGTGTTGTAGCAGTAAAGTATGtcattttaacattaatatttcaatattacaTAAACTATTAATGTCTGTTTTCTCCTACAGGAGTATTTCACTGGCTAGCCCTGGTAATATAGACACAggcccatgttttttttttttttttttggctatacaGTTAATGTGAAGTTATAAAATAACGGTATTCTCCACAAGCTGCATTTGCTCCATGGATAAGCTAGacttactttgtttttttttgttctacaaAGATCAGATCCCATAAAGCATGGTGATCAGGAGAGCACAGAAGCTTAAGCTGTCTAAGCCTCGGGTTCAGAGAGAATGAACTCACTGTTTTCATACACGCATAAAAGAAACAGGAGCAGTAAAAAGTcactttgttgttgttctgcTTTCCCCAGTATCACTATTTGCTTTGTTAAATTCAGTTCCGAGCGCATTTGAAATTCAGTTGCTTTAGAGGTTTTTCAGAagtttttcagtatttcagttcGTTTGAATATCAACAAGAATAGAATGTTATATTGTGACAGACACTGAATATGATCGACTATGTGCTTGCTTAAACCATCAGATGTTAAAATGGTGgccttcattaaaaaaaaaatcaagaggaTTCACCATTCTGTCTTAATGCTTTTAGACTaagactaattttttaggttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17202 lncRNA downstream 79334 25551138 ~ 25556770 (-) False cadm4
XR_003404619.2 lncRNA downstream 124852 25498527 ~ 25511252 (-) True LOC113545502
TU17193 lncRNA downstream 206594 25408078 ~ 25429510 (-) True G14444
TU17191 lncRNA downstream 224385 25408078 ~ 25411719 (-) False G14444
TU16932 lncRNA downstream 231798 25400756 ~ 25404306 (-) False G14258
TU17270 lncRNA upstream 61239 25758074 ~ 25763495 (-) False fxyd7
TU17271 lncRNA upstream 61239 25758074 ~ 25763495 (-) False fxyd7
TU17272 lncRNA upstream 61239 25758074 ~ 25763764 (-) True fxyd7
TU17274 lncRNA upstream 124914 25821749 ~ 25823635 (-) True G14514
TU17275 lncRNA upstream 138169 25835004 ~ 25837637 (-) True G14515
XM_026944807.2 mRNA downstream 46402 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA downstream 46402 25551130 ~ 25589702 (-) True cadm4
XM_026944870.2 mRNA downstream 108173 25521489 ~ 25527931 (-) False rps19
XM_026944871.2 mRNA downstream 108173 25521489 ~ 25527931 (-) True rps19
XM_026944771.2 mRNA downstream 148679 25443977 ~ 25487425 (-) False bcam
XM_026944831.2 mRNA upstream 16631 25713466 ~ 25722244 (-) True si:ch211-79k12.1
XM_034309064.1 mRNA upstream 61220 25758055 ~ 25764694 (-) False fxyd7
XM_026944866.2 mRNA upstream 61220 25758055 ~ 25763701 (-) False fxyd7
XM_026944864.2 mRNA upstream 61220 25758055 ~ 25763561 (-) False fxyd7
XM_026944720.2 mRNA upstream 75757 25772592 ~ 25840943 (-) False nrp1a
XR_004578410.1 other downstream 46401 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 46401 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 231798 25400756 ~ 25404306 (-) False G14258
TU16933 other downstream 231798 25400756 ~ 25404306 (-) False G14258
TU16922 other downstream 231798 25401945 ~ 25404306 (-) False G14258
XR_004578761.1 other upstream 769976 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2548507 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2549055 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 2554221 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 2558660 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile