RNA id: TU17272


Basic Information

Item Value
RNA id TU17272
length 1812
lncRNA type sense_over
GC content 0.39
exon number 6
gene id fxyd7
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25758055 ~ 25764694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCTTATGGCCTTTTGCATGGAAAAAAGAGGTAAGGGTTTGAAATCAAATATTGGATATATTAGCAGGTTGGCTTGGCCGCTAGAGGGCGCTGTGAAACTACTGGTTGGATTCCAAATGGCTTCACACACCCTGTATCAACCCACTGCATTGTCTCCTCAGACAgtctgaagagagagaaagtgagcaACCCAGCCCAGCTCCAGCACTGCAGACATGGCCACTACTGCAGAGTCGATGTGGGAGGACCAAAGTGCCTTTGATTATGATTATGAGACTCTGCGAACCACCGGCGTCATTCTCGCTGTGGTAATGTTTGTAAGCGGAATCCTCATAGCCCTGAgtaaaaaattcaaatgttcaAAGTCATCCAAGTAAGACTTTGCACACAAGTGGAAAGCCTGCTCTATGCATGTGGAATGACTTGGAAAGAAAGATGAGGAGACATAATGAAAGAAAGGACCTTCACCCAGAAGACTCTTCACTCAAATGCAGCCCCTGGGTTAAAGGCTTGCTGAGCGTTTCTCTTTGTCCAGAAACACTGCCTATCCATGAAAAGAACTATATTAAAAGTTGCAAAATTGCCTCAGAAAAGTACGGGATAAACACTGTACCTGGCAACATTGGAGTAGAATGAATATACTCAAGCTCTGGTGGTGAATTAGAGAAAACACTTTATAGAAACAGTGCTGCACTTTTTCTATAAAGTAGTTCTGTTTGAGTAATGTTTATCTGGATAGACAGTGTGTATGCGTAATGCTGAAATGCAGTGCATGCTGTAATCTCAGTGCCTGCCAATTTCTtcaaattaattcatattaacTGCATTAGAACTCATAGCAGGATACTGTGGTACTATTAGTGgcaatactaataataatctatcAAATTTTGCACTAATCGACaggtcttctgctggatttttaaacatttttccctGACTGTGCATGTTTGCTGACTGACGTTTTGTGAGTGCATTAGTAAGTTCTGCTGTTTGTCTATAAGAGCATGGTAACTTCTGCTCCAACTTTTTTCTGCAGATCAAGTCCTGTGGAACGGCTTCAGCCCCCCAAAACAGAAGtaCCCTCTGAGTCAGTATAGTGACTGAAATCTATGCCCAAGGATGCTCCTAAGAATGTGAGGAGAGCTGCATGGAATCAGTCACCTTTTTGTTCACACTGGATTTTGAGGCTTCCTAATTCTTTCTTTGTAAAGCTCGTTGTCTATGTCACAGTTGGTTGAGGACTTTTTTTGTAGGTTAATACATACCAGTGTTCataatttaatacataaaacTCACCACTAATTGTTTATTACCTATGCACAAAGGTCTATAATGCGCACAAATATAACTGTTGTTTAGTGGAAAGGATGTTTGTGGGATCGGATTTGTATTATAAAACTAAAAGATGGAATTTCAGCAGTAGTCTATGAAATTTGCCATGTGTTcactccctcctcctctcctaTTCTCATGTGTTTCACCATTCTCCAGTTTAGCAGCATGACTCTATCCTATTTCTGTATAACACAgcagcatttttaaaagttcATAATTTTGTCATACTAACAGCGTCATTTGGGAGCTGACCATAATATAATGATACACAAATATATGACTATGCAGTAGAACACTCCTGGCAACCTTTACCACAATGCTTCTACTATAGAAAGTAAATGCTTGAATTCTGATAATTATGAttagcatgtaaaaaaaaatttaacaaatagGAAAGCAAAAGGAATGTTGTTACCCTGACTACATTTGATTTCTAAACATTGACAatgacaaaaattaaaaaatgttgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17220 lncRNA downstream 61239 25636104 ~ 25696835 (-) True G14464
TU17202 lncRNA downstream 201304 25551138 ~ 25556770 (-) False cadm4
XR_003404619.2 lncRNA downstream 246822 25498527 ~ 25511252 (-) True LOC113545502
TU17193 lncRNA downstream 328564 25408078 ~ 25429510 (-) True G14444
TU17191 lncRNA downstream 346355 25408078 ~ 25411719 (-) False G14444
TU17274 lncRNA upstream 57985 25821749 ~ 25823635 (-) True G14514
TU17275 lncRNA upstream 71240 25835004 ~ 25837637 (-) True G14515
TU17264 lncRNA upstream 77358 25841122 ~ 25841958 (-) True G14506
TU17816 lncRNA upstream 340903 26104667 ~ 26109833 (-) True G15012
TU17916 lncRNA upstream 546259 26310023 ~ 26314327 (-) True G15111
XM_026944831.2 mRNA downstream 35830 25713466 ~ 25722244 (-) True si:ch211-79k12.1
XM_026944806.2 mRNA downstream 52559 25551130 ~ 25705515 (-) False cadm4
XM_026944807.2 mRNA downstream 168372 25551130 ~ 25589702 (-) False cadm4
XM_026944805.2 mRNA downstream 168372 25551130 ~ 25589702 (-) True cadm4
XM_026944871.2 mRNA downstream 230143 25521489 ~ 25527931 (-) True rps19
XM_026944720.2 mRNA upstream 8828 25772592 ~ 25840943 (-) False nrp1a
XM_026944719.2 mRNA upstream 8828 25772592 ~ 25840943 (-) True nrp1a
XM_034309095.1 mRNA upstream 274276 26038040 ~ 26419039 (-) False pard3aa
XM_026944877.2 mRNA upstream 274276 26038040 ~ 26419039 (-) False pard3aa
XM_026944879.2 mRNA upstream 274276 26038040 ~ 26419039 (-) False pard3aa
XR_004578410.1 other downstream 168371 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 168371 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 353768 25400756 ~ 25404306 (-) False G14258
XR_004578761.1 other upstream 703047 26466811 ~ 26512297 (-) False LOC113545420
trnar-ccu other upstream 2481578 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 2482126 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 2487292 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 2491731 28255495 ~ 28255567 (-) True trnar-ccu_2

Expression Profile