RNA id: TU18132


Basic Information

Item Value
RNA id TU18132
length 7704
lncRNA type read_through
GC content 0.41
exon number 2
gene id G15313
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26733362 ~ 26782469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCTTCTCTGACAGTTGTCCATCTGCAACAAATGGTGCATTCACTGAAGGGCGGCAGTGACGGCTCCACTCCATAAATCACTCCTCCAGGACAGCCCATCCATGCCCACTGGACAAACTTCTGGATGATAACAATATATACTAAAATGCCATCATTCTAAAAGTCAGGTCTCAGTGACCCCCAGggggtattttttatttttgttcatttttgttacaATGGTGGAAATCGCAACCTgtcattatcaaagttattacatttattaatgggTTCTTATAGATATTAGCCTCTTTGAggtttgaaatgaaatggatgACATTATCAATACCTAAATTATATCAATTTGAATTTAACCTCAGTTTTTataatgtgttctgtctgtgGAATGCTCAGGAAGGAAAACATCTGTGGCTCCAATAAACATTGGGACTATTATTGTACGCATTTAAACAATAAACCCCaatatttgaataaatctgTATTACACAGGTctgctgagtttttttttttatatatataagctaAAGAAAGTTTAAGAACCCCTATATGATGGTATATGGAAATGCTTtttcaaaaacaattttttttctcaattataAGCATTTGTAAAACTCAATTATAAGCTTTTGTTTAAATCATGGTTGTTTCTCAAAGGGACTGGTCTGTTTTTAATGCTAATTCCAAACATGCTTATCCAATTACTATTTTGTAGGAGTCATCATGAAGCTGTCTGAACAAATTCTTAAAGAAATCAGCTAACTGATATATGAAGTAGTGAACGAAATGTTCAGCATTTGAGCTGAAATTGAGCTGACATAGCTAGCTGGTAGGAAACGGCAACACAATGGAATGCTGTGGTATGATCATTAACTAGATAAACCATCACAGCAAATGTATAAATAAGGCCCTAAAGCTCACTCTGTCTTATAACATTGCATACGATTTATAATAAAGTGcaataaagtaaaattttaGGGAAAATACTCATTGCCTCAACTGTTTCTAACAGTATGTTGTCCATCTCTATCCCACAGCATGGACCTTGGAACCAGTAACTAAAACATTGTGTGCGCATTCATGTTTTGATACTAGTTCTACTCGTTCTCTGACAGAAAATGTGTGAAGCCATGACACAGAGATGATGTATTATAAATTTGGCACTGAAATTAACATGGATGGACATAATCTGCAAATGACATGATATCAGTGAAAAAATTGTACACTCCTACGAATGGTTTAGTCAGTATTACATAGAGAAATAGAGTGAAACTGAATTCGTGCAAACATTTACTGTGATCGGCAGTGAGAATAAAGGTGTGAATGATGACTAGGTGAGTGTGAATGCAATATTCCCAGTCCAACATGGCGCAGAGAAGCCAGGACATTTTCTGATGGGTTTTACACATCAAGTGCTGGCCAGAGCATTCTGAAAAACAGAGATGTAATAGTCCAAGATTAGCTCTGGTTAAGTCATACTGAAGTTGAGCTCACAGCTGTATCTCTGACTTTATGTCTCTGGAAACTAAAGGACTAAAGATGCTTAGGATAATCTCTTTTTGAAGCAAGGTTAAGGCGTGGCTGCTGGTTTCATGAGGTAAAACCCAAAAGCCTCCCTACACCTGAAAAGAAAACGATGGAGGGAGGGATCGGGTGCTCGAAGGGCTTTTCAGGCCCGTTAAGCCGACAAGCCATTACACGCCGACATGAACAGATCCCCCAATATGCCCTGAACACACAACGTGCTCCCTGAGCTGCAGATCTCAAAGACATTCAATAGATTCAAAAGTCTCTGCTCTTCAAAGAAAATAGCTATGCTGACTAACAAGTACAAAACCTCCATAACAGTCATCCACTTCAGTCTGAAAAATACAGTCATGTTCGTTTTAGTTTTGCACAGAATCTGTAAAGAACTGGATTAGCTATGGTTACTGATGCTACAGCTAGGCAAATGGCTGTATCTCCCAACatcttattaaaataaactcaAAGTAGTAGTTGTCAGGAAATCTCCTGTAATAATAATCTGGGTATAGACTGGGTGACTATGTGTTCtgctttcaaaatattttctctaaccttctttttttttttttttttgaaaagctcTTTAAAAAGAACCAAGCTCTACTGTAATGAATGTCAGGCAGGGATTCCTGCACCACGATCCCAGTAAACATCTCCTGACTTCTTCATGGTTCTTAAATTTGAAAATCCTAACCACTGTACCTTCATGGTGTTTAGGGGACTGATGCCCAGGCTACTATTAGTAGTGGTATAAGTTGTAGAGTTGTGCTGCCGGGCGTCTGTGGGTTCCACCTTCTCTGTTCAGGAGACGAGACGGAGGAAAACCGCTGGAGGGGGGTTTTAATGGAGCACTGGGCAGATACGCCTCTTACAGCATGCTATAATGGAGCTCTTTGTGAAAGCAAGAAGAATACACCCTTCATCTGGACTGAGACTGAGGCTATCccaatgtctgtctgtctttctctcacacacactctcacatacacacaccgagAAAGCACACATGATTTGTGGCCTGCAagaccttttttcccccctctacTGAAGAAGGCAGCCACTTGGGAGATGAGAAAAAAGTACTCATTCAGCAACTAGATGGCACTGTACTTAGTCAACACCTGTCCTTGTAATGCCAGAACAACTGCAATGTTATCTGCAGTTCCAGATGAGTCATTGTACACACCTCTACTTCTAGTCctcactttctcactcactccctccttCCACACCACTTTGGCTCCAGTTCTGATGTTATATGACCTAAACTCCAAAGTGAGGATGGAGGCCAAAGTACAAGGCCATAACATCAGCCAACTGTTGCAGTGGAAGCTCTCACCCACCTACCTTTCAGGACCTACCCAGTAAAACCAAATCACATGACTACCCTTCAGCCAATGATAGGCTGGACAGCCAGCTGTTTGTTATGGCAGTGCGCTTTGATTGACAGGCAGACCAGCCCTCGCAGTGGGGGTTATCCGTCAAACTCGGGGGGTATGTGGGCATGCTGAAACTTCTCGGTTACACTGAAGCGACTCTGCGGCATCACATCGCGTACTCTgctctcccctcctctcctctggCTGAAATAAGagtcacattgttttttttccttgccactccACAGTCACTGTGCtagtctccctctctctctctctctctctgtacataGGCCTCTGCCTGAGGACATGCTCTTACAAGGGAGTAATTCATCTGAAATAGGGGGTTGGAAGCTCTGAAACTTCAGAGAGCATTTTAAAAAGCCCTggttatctatttattttttacatgatgAGATGTAATGCCCCAGGTTTGAATGGGATGCTCTGAATGAGTAGATGACTATCTTAAGAAAGTGCCAAATTGCAACGTGGTGGCTTTGACAAAAGCTGTGTCTACACATCCCCAATTTCATCATCTACAAAATTTCCAATCCACTGTGACTTTTGCAGAGAGAACGAGCATCACTCAGACGAGAAATCTTCATAGAGAAAAGTGTCTTGCTGTTAGCACTCGATAAATAGTGGAACACAGAAGAGACCATTAAGTGTACAGTACAAAAGCAGAATCAATGGATTGTGCTATTCATTCCAGTGCTACTACTGTTATTTTAAGTGGCATTAATGAGCTTTTTACTCTGTTCAAAAGACAGAGGTCAGCAATGCCTGTATATGTGAAACACAACTGATTCATGACAGAATGTACAGGAAGAGAACGCTGAATGAGGAACATCAAGATCTCTGTCGTTCAGCATCGCAGCAGTCACGGGTTGGGGTCATGACAAACCGGTCCCTTTTGTAATCCCATGGCACTCTGCGGAGGCGTTAGGGCAGTAGCATTTCGGCTGTGGGACTGTAAAGGCCTCATTTCCATCTGTATGGGCCCCCTCAATGTTTTGCCAACAGGGTGATAAAGAGAGTTCCATCAGATGTTAGCCAGCACCAGCCTGGGTACAGATTGGTGGGTGGGTTACAACTCTCAACACAGTGAGGCCTGTGAGAGAATGAAAACGGTTAATGCAGCAATGGAGATGCAGGAAGGGAACATATATCAGTGGCTGACTTTGGGTTGGTGAGACAGTCTTTGTCCACTGAAGCAAACTTCTCACAAGCCAGAGGACATTGTGCATTCATTCTCCACTTGCAATTCTCTAAATGTAGTGGTAATTATGAAATCCTGAAACAACAGCCAGTATCCACCATTTCCTGTTCAGCAAACATCTGAAAGACTTGCAGTCTGGTGGGAAAAGCCATTTCCTTACTGAGGGATGAAATGAACGGAGGAAACCACAAccctacaaacacacatcaaTGTTCAGAACTAATTACACACGCCTGAGATTAACATGAAACATGTCTAGGGTCTTGGTCATCAACTAGTTCCACAACACCTCCCTGAGGCTTTGCTGTGTTGGCATTCAGGCTGCTGATGGTAGTTGATGAGATGCTGAGTGACCTTTCTGGAAATATAAGATAAGCAGATACAGATACCAGAAACAAGCCCAAAGTAGAAATACACTTAACATCACTAAACAACATATGTGGTCTGAATCGGTGGTCCTGTTTACTACTTGAACTCAGATCTGTCCCCATCCAATCACACAACTTGAGCCACACACTGAAATTGTGTGCCAATCTTCTGGCTTGATTTCAATTTGGTACACAAGATCACAAGCTTAGATCACTGCTATTACTCTCTGGTCtctaatttcattcatttacttcCTCCATAGTAAGCAAATAGGtcatacatgtttatattttaatctgAGTGGTCTTAAACCGTTCAGAAATTTCACTGATAATAGCCAACCATGTTTTGTCCTAATAATGGTCAGCGAGAGCTGCATGTTACTgcttaaaaaactaaaatagatTCAGTACACCAGCTCCTAGTAAGCATTGATGAATAAGGCAATACAAAAAATTGAATATGACTGCAATAAACTTAAACATTGACTATAAACAAGAGTGGAACAATCTCTTTGAAGAACCCTTGACCCAGCTTCCTACTTATGAGTCTATCAACAACCTACTTATCtcgttctctcttttttcctgaaCTTTATGGCCATCTTTGCTCTAGTCCCCCCCCCATACTTAGTACCAAAGTTCACAAGCTGAGGCCTAACTGAGTGGTTAATGATAACACTCCTTTGAAAGAAATGGTCTGCTTGATGCTGAGGTCACAGGGCACAGTGTGACGGAGAAAGACAAGGTGACCAACTGACTTCCTGATGACTAAACCTCAGCTGAAACTGTTTTGAGAAATGGTGGTTACAGCTCATCCCTTTTGTAATCTAGACGGCAGGCACAGACAAGTCGGACCTTATTGCGTTTGATTGTACTTTCTTACCCATCACACCATAAAATATTCCATGCACAACTCTAGAGCTGATAAACCAAGATTACAAGGTTGGAATTAGATTATTTGCATTGTAGGGAACCTAACAAATTGAGTGCAAGTGAGCAAATATGTGAAAGGTAGGGCACAGGAAGCTGGGCTTGAACAAGGTGGTGTTGTTCAGGTAGGCCTGTTTTGAAGTGTGAATTACTGATATGGAATAGGTGTCGAAGGTGGGCAGGGCTTGTGGTCGTTCTTTATGTGCCTAGATCCTGACCAAGAGGCCAGGTTTCAAGCAGGAGAAAGAGTCCAAATCACTCCCTTTTGTGTCTCCTTCCTTAGGGGTGTGGCAGCAAAGCCAGGACCATTAACTCCTTATTTCTCAAGGGAGGCTGACAGTGTACCATTAACCCTAGTCTAGTGGGCCAGGCACATCTTTACATTTTACCTGCCCCCACATAACCGCAACCCAAATTTAGGCCTAGACACACAAACTTGAAATAGACCAGTCCCCACCCGGACCTCTTCACCAGCTCAGGCTGCATCactctacagcatttattttgGAAACACTACTGGCTGCATCTGTGTCCACCATCTTTCCAATGCTTATGTACCAACACATGGGGTGGTGGAGGGGGGTGGTGGAGAGGAGGGGTTTGAGAGAGTTCTCAGTCTTTTGTCAAATTGCTTGACCAGACACTGTGggggttttgtttttcatttgctctGCAATGGCATGACGTGAAGGCATTAACTGAAAACTCTCTATATCGTCTGTATATTCAAGTGGACTGAGTAAGAAGCTGTTGCTGTAGTCAGAGATGCAAGCAGGGCTTGGGTGTGGCGTCCAGATAACAGTCATTCACAACCCATAGTTCAGCCACTGCTTTATATTTGCAAGAACAGGCCGACACACATTTAAGGAAGACAAACTGAACTGGAAATCCCTCACAATTGAACAAGACAATGAACATCTTGTTTGTATTGCTCAGTTGTAAAATACCTGCTTGAACAAAAATTTTTATTAGGAACAAAGTTTTCTGGCTGATACAGCAACATGctgataaagtttaaaaaaatgtgaccaACAGGCAATGACATGGCAATTTCTCAGAATGACTTGCTTAtggataatttttaaaaagcaaagacGAAGCATATTTGACAGTTCCTTGTCCTCTCATGTCATTTAGCAAGACTTctgtgaaaagggaaaaaagtgcaGCTGAAGTTTCAGTGTGTCAAATTCCTCAGTCCCCTTCCCCATCAGCAAGCTCCAATCCCATTCTTCAGCACCTATCTTTGAGCCTCGACCTCCATTTCAGGTACTACTGATGGACCCCACCCTTACCTACCCTCCCCCATAGCTGTACCACTGGCTAGAGGATGCTTTCTGTTAGGTAAAAATCATGCTGTTCCCTGAGAGGCTGCAAATATTGTGTGGCTCAACTTTTTTACAAACCAAAGGAGCAGCAAAAGTAGGGGCATGCACTCCTGTCTCCGTGGAGACAAGGTGTGTCCCGTGTTTGCAGAACAAACAATGGTACCTTTTCAGCCCAGTGTGAGTGGGGAGGCAGGACattgtgtatgtgggtgtgcaTAGAGCACCTAGGGCGCTGAAaaggtaacaaaaaaaaaaaatatatatatatatatatgattattttcttaaaatgcataattgaATGTTATGACGTCATACTACAAGTAGGTTACGTAGAGGTTACATACGGGACACTTGTATTTTCAGGCTTAAGATTAGCATTTGAAGTGGTGAACATtaagatttttctttatttccttttcttttgtttgtgttttgcgTTTATTTGATTTTACACAAGTATgtgtcttgaaaaaaaaaaaaaaaaaaaaaggccagcaTGTCAAACCAGTGCACCACTGCGTAGGTTCTTATTTCACGCATGCGCAGTACTAAAGCAAACTCCcgtgtagtacagtagtatgcagtTTTGGCCGTAGGCTAACGTAGCACGATCTGATTGAGGATGAGATTTTACCGGCTGGATTCAGTGGATAAAGTGAAGTTAGCTAGCTGTAGGCTGCTATCTGATGTTGCCAAGGCATCTCGTTTCACTGCCTTCAAAAAAAcgtgtattttatttgttcGTTCGTTTTGTTTCTCCAGGGGATgttgcatataaatataaatatatatataaatattccaGAAACCATACAAGTATAAATAAGAGACGAATTATGTGAGAAGAGTTTGAGATAAAGAGAGATACTTTAACAGAAACCGTTTTAAAAACAGATTGATATACAGGTATATAAAAGATTGCTAATAAAAGAGGCataaaaaagc

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578627.1 lncRNA downstream 281047 26448656 ~ 26452315 (-) True LOC117597861
TU17986 lncRNA downstream 286422 26446652 ~ 26446940 (-) True G15174
TU17971 lncRNA downstream 326233 26403523 ~ 26407129 (-) True G15163
TU17916 lncRNA downstream 419035 26310023 ~ 26314327 (-) True G15111
TU17816 lncRNA downstream 623529 26104667 ~ 26109833 (-) True G15012
TU18178 lncRNA upstream 40766 26823235 ~ 26836478 (-) True LOC117598133
XR_004578839.1 lncRNA upstream 41573 26824042 ~ 26836478 (-) False LOC117598133
TU18263 lncRNA upstream 338717 27121186 ~ 27121502 (-) True G15438
TU18346 lncRNA upstream 594876 27377345 ~ 27378160 (-) True G15506
TU18373 lncRNA upstream 603822 27386291 ~ 27388809 (-) True G15528
XM_034304296.1 mRNA downstream 157064 26530759 ~ 26576298 (-) True LOC113545413
XM_026944759.2 mRNA downstream 220568 26491060 ~ 26512794 (-) False LOC113545420
XM_026944755.2 mRNA downstream 220568 26491060 ~ 26512794 (-) True LOC113545420
XM_034307300.1 mRNA downstream 221065 26491060 ~ 26512297 (-) False LOC113545420
XM_034307309.1 mRNA downstream 221065 26491060 ~ 26512297 (-) False LOC113545420
XM_034307628.1 mRNA upstream 68241 26850710 ~ 27020775 (-) False LOC113545483
XM_026944859.2 mRNA upstream 68241 26850710 ~ 27016185 (-) False LOC113545483
XM_026944860.2 mRNA upstream 68241 26850710 ~ 27015831 (-) True LOC113545483
XM_026944861.2 mRNA upstream 68241 26850710 ~ 26880422 (-) False LOC113545483
XM_026944823.2 mRNA upstream 526547 27309016 ~ 27319449 (-) True rmdn1
XR_004578761.1 other downstream 221065 26466811 ~ 26512297 (-) False LOC113545420
XR_004578410.1 other downstream 1143659 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 1143659 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 1329056 25400756 ~ 25404306 (-) False G14258
trnar-ccu other upstream 1462873 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 1463421 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 1468587 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 1473026 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_3 other upstream 1473776 28256245 ~ 28256317 (-) True trnar-ccu_3

Expression Profile