Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU18162 |
| length | 204 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | f13a1a.1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 26745018 ~ 26757243 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578627.1 | lncRNA | downstream | 301426 | 26448656 ~ 26452315 (-) | True | LOC117597861 |
| TU17986 | lncRNA | downstream | 306801 | 26446652 ~ 26446940 (-) | True | G15174 |
| TU17971 | lncRNA | downstream | 346612 | 26403523 ~ 26407129 (-) | True | G15163 |
| TU17916 | lncRNA | downstream | 439414 | 26310023 ~ 26314327 (-) | True | G15111 |
| TU17816 | lncRNA | downstream | 643908 | 26104667 ~ 26109833 (-) | True | G15012 |
| TU18178 | lncRNA | upstream | 69185 | 26823235 ~ 26836478 (-) | True | LOC117598133 |
| XR_004578839.1 | lncRNA | upstream | 69992 | 26824042 ~ 26836478 (-) | False | LOC117598133 |
| TU18263 | lncRNA | upstream | 367136 | 27121186 ~ 27121502 (-) | True | G15438 |
| TU18346 | lncRNA | upstream | 623295 | 27377345 ~ 27378160 (-) | True | G15506 |
| TU18373 | lncRNA | upstream | 632241 | 27386291 ~ 27388809 (-) | True | G15528 |
| XM_026944830.2 | mRNA | downstream | 13056 | 26735211 ~ 26740685 (-) | True | nrn1a |
| XM_034304296.1 | mRNA | downstream | 177443 | 26530759 ~ 26576298 (-) | True | LOC113545413 |
| XM_034307309.1 | mRNA | downstream | 241444 | 26491060 ~ 26512297 (-) | False | LOC113545420 |
| XM_034307628.1 | mRNA | upstream | 96660 | 26850710 ~ 27020775 (-) | False | LOC113545483 |
| XM_026944859.2 | mRNA | upstream | 96660 | 26850710 ~ 27016185 (-) | False | LOC113545483 |
| XM_026944860.2 | mRNA | upstream | 96660 | 26850710 ~ 27015831 (-) | True | LOC113545483 |
| XM_026944861.2 | mRNA | upstream | 96660 | 26850710 ~ 26880422 (-) | False | LOC113545483 |
| XM_026944823.2 | mRNA | upstream | 554966 | 27309016 ~ 27319449 (-) | True | rmdn1 |
| XR_004578761.1 | other | downstream | 241444 | 26466811 ~ 26512297 (-) | False | LOC113545420 |
| XR_004578410.1 | other | downstream | 1164038 | 25547034 ~ 25589703 (-) | False | cadm4 |
| XR_004578411.1 | other | downstream | 1164038 | 25547057 ~ 25589703 (-) | False | cadm4 |
| TU16933 | other | downstream | 1349435 | 25400756 ~ 25404306 (-) | False | G14258 |
| trnar-ccu | other | upstream | 1491292 | 28245342 ~ 28245414 (-) | True | trnar-ccu |
| trnam-cau | other | upstream | 1491840 | 28245890 ~ 28245961 (-) | True | trnam-cau |
| trnar-ccu_1 | other | upstream | 1497006 | 28251056 ~ 28251128 (-) | True | trnar-ccu_1 |
| trnar-ccu_2 | other | upstream | 1501445 | 28255495 ~ 28255567 (-) | True | trnar-ccu_2 |
| trnar-ccu_3 | other | upstream | 1502195 | 28256245 ~ 28256317 (-) | True | trnar-ccu_3 |
