RNA id: XM_034304597.1


Basic Information

Item Value
RNA id XM_034304597.1
length 2496
RNA type mRNA
GC content 0.46
exon number 16
gene id f13a1a.1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26745018 ~ 26757243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGGTACAGCTGCATACAGCATCCTTAACAGAGCATCCTATAGTTCAACGAGAAGGGACAGACCACCTGTGTACTGACACCATGCCGAAATTTGATCCATGTGAGAAAAACCGAGGCCGGTTGAACAGTCCAGTTTCCTGCATCAATGGAGAGAACAAGATCCTGCCTGAGTTTGAAGTGTTTCATGAAGCAACACCTCGGGCCCCCATGCCTACTGATGaaaatctcATTGTGATGAATATTAACATGTATGACAATATGAACAAGCTTGCCCATCACACTGATGCATACAGTCTCAGCAAACTGATCATCCGTCGGGGTCAAGAGTTCATCATGGGCATCGTCTTCAATCGCCCATTTAACCCAAAAAAGGACTTGTTTTTTATTGAGTTCCTGATTGGCAATAACCCCATCAGTACCCAAAAGACTTTAATCAGTATAACCTATGGTGGAAATAACCAGACCAATGATTGGAATGCCCGTGTGGTGGAGACCATAAAAACTGAGATTAAGATGGGCATCACACCAGCTGCTGACTGCATTGTGGGTCTGTACAGCACCTATGTGGGTGTTATAACCAATTCTGGAAAACAACGCTCTCAAAGAAATGAGAAGACAGACTTCTACGTGCTGTTCAACCCCTGGGCACCTATGGATCAGGTTTACCTGAGCAATGAGGAAGAGAGGCAGGAGTATGTGCTGAATGATGTGGGAATGATCTACAATGGAGACTATAATAATATTGGCAGACGACCGTGGAACTATGGGCAGTTTCAGAGTGGAATTCTGGAAGCTTGCATCTTCATCCTGGATTTTGGGAGAATGCCCCTCCAGTACAGAGGAGATGCTATAAAAGTGGTTCGGAAAGCCTCATCCATGATTAACTCGCTGGATGATGATGGGGTCCTAGTAGGTAGCTGGGGTGGAGACTTCAGCCTTGGTACTGCGCCCACAGCCTGGACAGGCAGTGTAGAGATTCTGCGCAAGTATTTTTCGGAAGGTGGACTGCCTGTCAAGTATGGCCAGTGTTGGGTGTATGCTGGAGTGTTCAACACTTTCCTACGGTGCCTTGGCCTTCCTGGGAGGGTGATTACCAACTACTGCTCTGCACATGACAACAGTGGCAACCTGAAGACTGACATTGTGCTGGACGAGGATGGCAGTCTGGACAGACAGGTCTCAGACACCATCTGGAACTTTCACTGCTGGAACGAGGTGTTTTTTAAGAGGACTGACATGCCAGAAAACTACTCAGGCTGGCAGGTGGTGGACTCCACTCCTCAGGAGATCAGTGAGGGTTATTACCGTTGTGGTCCTGCAGCTGTGATAGCCATCAAAGGTCAAACTCTCGGCTATTCGTTTGATGCAGGCTTTGTTTTTTCTGAGGTCAACAGTGATGTGGTTTACTATAAAAGAGACAAGTACGGAAACATGAATGTCATCTATGTGGACCGCACCTATGTAGGAAAGTTGGTTGTGACCAAAATGATTGGCTCCAATGATCATAACAACATCACAGACTCTTACAAATATGATAAGAGAGTGTCACGACGGCAGATACAGACGCAACTGAAAGACGCCAGTGTTTTGGATTCCATACTGGCAGGCAGTGATGTGCAGCTGTACACGCAGGCCACCAAAAACAACAAGGACATAATGTTAACCATGACCTTTAACAACCTGAGCAAGGGACCACGCACCATCACCTGCAAAATCACGGGCAAGGTGGAATACTACACTGGAGCCACTCGGACCCAGTTCATGTTTCTCACCCATGAGGTGGCTCTGCAGCCTTTGGAATCTAAGCAGGAGGTCATCATAGTAACAGCAGATGAGTACAAGAACTTCATCATAGGCCAGTCTTTCCTCTGCTTCGTTGTGTACGCCTTCATCCACGAGACCAACATGTCCCTCATCGGCATGGAATCGATCCATCTGGACACCCCTTCCCTTCTACTTGAGGTGAGCAAATTCTCTCAGGTTGGAAAGGATATGTTTGCGATCGTGGGCTTCACCAACACACTTGGCTACGACCTGACCAATGTCACTGTGCGCATGGAGGGAATAAACCTCTTTCCTGTGAAAACCAAAACgtacagCATCATTCAACAAGgttctaaaataaaatggattGAGTCCTTCAAGCCTCAGCAGGCCGGCACCAAGATGCTGGTGGCCTGCTTGGATTGTGCCACTCTGAGAGATGTGTGTGGACACCTGGAAATCGTCGTACATCCTGGACACAACTAAGCAGGAAGatgcacacacagaaagagagagagagagagagagagagagagagagagagagagagagacccaatgcattttctttcttttttgctcaTCTAATCACAATATTATAGATTTGTATTGATCTAAATGAATATCATACCAATTACATGTGGAGATTGCTTACAGAATCTTTCAGAAATAATGATAGTGATTCAGAAAAGTCtgcatagttacatttaatttgttatGACACCCaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578627.1 lncRNA downstream 292703 26448656 ~ 26452315 (-) True LOC117597861
TU17986 lncRNA downstream 298078 26446652 ~ 26446940 (-) True G15174
TU17971 lncRNA downstream 337889 26403523 ~ 26407129 (-) True G15163
TU17916 lncRNA downstream 430691 26310023 ~ 26314327 (-) True G15111
TU17816 lncRNA downstream 635185 26104667 ~ 26109833 (-) True G15012
TU18178 lncRNA upstream 65992 26823235 ~ 26836478 (-) True LOC117598133
XR_004578839.1 lncRNA upstream 66799 26824042 ~ 26836478 (-) False LOC117598133
TU18263 lncRNA upstream 363943 27121186 ~ 27121502 (-) True G15438
TU18346 lncRNA upstream 620102 27377345 ~ 27378160 (-) True G15506
TU18373 lncRNA upstream 629048 27386291 ~ 27388809 (-) True G15528
XM_026944830.2 mRNA downstream 4333 26735211 ~ 26740685 (-) True nrn1a
XM_034304296.1 mRNA downstream 168720 26530759 ~ 26576298 (-) True LOC113545413
XM_034307309.1 mRNA downstream 232721 26491060 ~ 26512297 (-) False LOC113545420
XM_034307628.1 mRNA upstream 93467 26850710 ~ 27020775 (-) False LOC113545483
XM_026944859.2 mRNA upstream 93467 26850710 ~ 27016185 (-) False LOC113545483
XM_026944860.2 mRNA upstream 93467 26850710 ~ 27015831 (-) True LOC113545483
XM_026944861.2 mRNA upstream 93467 26850710 ~ 26880422 (-) False LOC113545483
XM_026944823.2 mRNA upstream 551773 27309016 ~ 27319449 (-) True rmdn1
XR_004578761.1 other downstream 232721 26466811 ~ 26512297 (-) False LOC113545420
XR_004578410.1 other downstream 1155315 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 1155315 25547057 ~ 25589703 (-) False cadm4
TU16933 other downstream 1340712 25400756 ~ 25404306 (-) False G14258
trnar-ccu other upstream 1488099 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 1488647 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 1493813 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 1498252 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_3 other upstream 1499002 28256245 ~ 28256317 (-) True trnar-ccu_3

Expression Profile