RNA id: TCONS_00007732


Basic Information

Item Value
RNA id TCONS_00007732
length 944
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_004054
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15802450 ~ 15803637 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtactcttattcagtgcttgggttttatatggggtgtttaatgaataaaaggtttacaacctgtgaaattatgaacccttattgtatactgtatgtattttaaatctgcaattcaatataaaatatatttccatacactacttaccttatgtttactcgtcgatctcaccaaagccatcaatgtccccataactcactatcaacaaataactttgcatgacatagtcctaccgtcagggttcaatgcagattaaaacaggctcgcatctttactgctgttgcacaggggggctaactgttgcatttcagtaaatgtatagctgatactttatagaaaaatctagtaatttggtctttaatcaataaaaactgctgctgtagtttactctgttctagTGTTCAAGTATatactagtatgttaaagttcagcttcttccctctttgttccctgtagttaaagggtaaatacagtatttgttccctccttgttccctgtacttacaggggtaaatactacatttgagggttgtaaattaaagtgaagctttgttcctcccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacaggggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacagggtaaatactacatttgagggttgtaaattaaagtgaagctttgttcctcccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0019207 kinase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160082

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007731 lncRNA downstream 2527 15798258 ~ 15799923 (-) True XLOC_004053
TCONS_00007730 lncRNA downstream 4882 15796093 ~ 15797568 (-) False XLOC_004052
TCONS_00007729 lncRNA downstream 4882 15796093 ~ 15797568 (-) True XLOC_004052
TCONS_00007728 lncRNA downstream 21527 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00008782 lncRNA downstream 40579 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00007733 lncRNA upstream 2755 15806392 ~ 15807508 (-) False XLOC_004055
TCONS_00007734 lncRNA upstream 3006 15806643 ~ 15809019 (-) True XLOC_004055
TCONS_00007739 lncRNA upstream 41951 15845588 ~ 15846513 (-) True XLOC_004057
TCONS_00007750 lncRNA upstream 300371 16104008 ~ 16115790 (-) True XLOC_004061
TCONS_00008461 lncRNA upstream 316375 16120012 ~ 16120290 (-) True XLOC_004062
TCONS_00007727 mRNA downstream 366955 15345654 ~ 15435495 (-) True XLOC_004049
TCONS_00007723 mRNA downstream 505267 15270295 ~ 15297183 (-) False XLOC_004047
TCONS_00007735 mRNA upstream 29928 15833565 ~ 15850794 (-) False XLOC_004056
TCONS_00007736 mRNA upstream 29928 15833565 ~ 15875022 (-) False XLOC_004056
TCONS_00007737 mRNA upstream 29928 15833565 ~ 15875054 (-) False XLOC_004056
TCONS_00007738 mRNA upstream 30760 15834397 ~ 15874974 (-) True XLOC_004056
TCONS_00007740 mRNA upstream 210890 16014527 ~ 16021424 (-) False XLOC_004058
TCONS_00007689 other downstream 2319663 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 3046175 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 3110759 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 3180683 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 3211154 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 214246 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 217292 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 254554 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 323745 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 529187 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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