RNA id: XM_026944885.2


Basic Information

Item Value
RNA id XM_026944885.2
length 6020
RNA type mRNA
GC content 0.48
exon number 11
gene id gpr158a
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30232323 ~ 30333220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAACGGTGTGTGCTGCCGTTTTCAGTGCTTTAACTGAAGCGCTGCTCGGAGGAGGGCGGAGTGTGTTTGCGAGGATACCGAGccaaaaaaattgaattatttctatattttgtaCCGAGCAGAAGACAGAAATCCGTTTCGACGTCCGCGTGGATTGGATCTGTTTATCAGAATCGGAGGAAATCTGATCTACACAAAGCGACGAAGCGACAGGATACTGTTGtaacatcacacatcacacagcagCGAGACAAATGTAACGGTGTGttaaggaaaaacaacaacaacaaaccagCAGAACAGGAAGCAGGAGTCAGGTGGGACTGCAGCCTCTACAGgtgcaggaggaagaggatgctGTGAGATCGGTGAGGCTCAGACGCTGAAGCTCGCGCAGGTTGAAGGATATGGCGGTGATCAGACTGTCGCTGCTGCTGCAGGTGGGCTTCGTTGTGGGCGCGCACTGCTCGGCTCTGGCACCGAGAACGGACGAGcatcatcagcttcatcatcagcatcagtatcatcatcatcatcaacatcagcagcagcagcagcagctccagcaTCAGCAGCTGCCGAGGGTCGTGGCTGCGTTTCTGCACACGGGCGACCCGTCCGCGCTCGAGCGCGCCAACTGCACCGGGAGGTACGAGCTGAGCGCGCTGCGGGCCGGGACGCGCGCGCACCCGCACCCCGCCGCCCGCCCCGCGCTGCACGCTCTCACGCACGCCGCCAGCTTCCTGCGGGCGCTGCTGAGGGAGCGGGAGCGGGAACGGAACCTCGTGCGCGACCTGGAGTGGTGCCGCGCGCTCGTGCGTAGCGTCGTGGACGGCGACGCCAGGATCTACCGCGCCGCCGTCGTGTTCGACGCCGCGTCCGCGTCCGCGTCCGCCTCCGCTGCCACCGGCTCCGCGGCTCACCCGCCGCGCGTCTTCCTCCAGGCCACGCGCCGCGGCGGAGACGTCGTGCTGCAGGACCTGTCCGCGTCGGCGCGCGACTTCTTCCGAAACGAGACCGCCGACACCGAGTGGTACCACGCGCACAGGCGCAAGACGCGACACGGGGAGGAGGGTCACGTGGATGAAAGCACGCACGTGAAGTGGTCGGCTCCGTTCCTGGAGTGCGAGGCCGGGAGTTTTGTCCCTCGGTGGCTCCTGAGCTTGTCCACAGGCTTTCACGGGCTGAAGCCGAACCTGACGCCTGAGTTCAGgGGAGTTGTTCGTTTGGATATCAGCCTGCAGGACGTGGATATCGATCAGTGTTCCACTGACGGCTGGTTCGCAGGAACTCACAGGTGCAACCTGACCAGCATGGAGTGCCTCCCCATCTCGGGTCACGGCTTCGTCCTGGACAAATACAAATGCCAGTGCAAGAGTGGCTTCTACCATCCCAGCAGAGTAGCCATCAACGGCGTCAAGAGGAAGGCTGTGAGCACACAGGACCCTGCGGGTTCCAGCCTGTGTCTGCCCTGTCAGGAGGGCTGTGTGCACTGCAAGGACGATACACCATGTGTGGCTCAGGGTGAAGGATATCTACGTATCGCCGTGCTGGCCTTCCAGGGCATCTGCATGCTGCTGGACTTCATCAGCATGGTGCTGCTTTACCACTTCCGCAGGAACAAGAGCATCAGGGCTTCAGGTCTGGTTCTGCTGGAAGCCATCTTGTTTGGAGCACTCCTTCTCTACTTCCCTGGGGTGGTTCTGTACTTCCAGCCCAGTGTGTTTCGCTGCATCCTGCTCAGATGGGTGCGCATGCTCGGCTTCGCCACCGTGTACGGAACCGTCACGCTCAAATTATACAGGGTTCTGAAGGTGTTCCTGTCTCGCACAGCTCAGCGGATCCCGTACATGACCAGCTGGAAGGTTCTGTGCCTCTTGTGCATCATTCTCCTGATTGTGCTCTGGTTCCTGGTGGCGTGGACTTTGGCCGTGTGCCAGAACCCAGACTGGCACTTGGCACTGATCACCGTGGGCTTCACCCCAGAGGGTCTGCAGTTCAGTATGTGCCTGCTGGACCGCTGGGATTACATGATGGCAGTGGCTGAGTTCCTGTTCCTCCTGTggagtgtgtatctgtgttatGCCGTGAGGACGGTGCCTTCAGCCTTCCACGAGCCGCGCTACATGACCATCGCAGTGCACAATGAGCTCATCATCTCCGCTATATTCCATGTGATTAGATTTACTTTTGCATCGGAGCTGCACCCTGATTGGATGCTTATGCTATTCTTCGCTCATACTCATTTGACAGTGACAGTTACACTGGGGCTCTTACTCTTCCCAAAGTTTCTGTTTGCGGGGACACACCTGAGGGATGACATAGCAACTGAGGCCTATGAGGATGAGTTGGACATGGGACGGTCAGGGTCATACCTGAACAGCAGCATCACATCTGCATGGAGTGAACACAGTCTGGACCCAGAGGACATACGGGAGGAGCTAAAAAAGCTATATTCTCAGTTGGAGATCTATAAACGGAAAAAGATGTTGGCCAACAACCCGCACCTGCAAAAGAAACGCAGCTCCAAAAAAGGCCTGGGGCGCTCCCTCATGAGACGCATCACCGAGATCCCAGAAACTATGGGTCGCCAGCATAGCCGCGAGGACAAGGAGCTAGGCGAGCATGGTAGTAACCGCAACAGCATTTGTGTCCTGAGGAAGAATCCTTTCGAGCCATCACATTCAGCAAAACCTGCCAAGGAGGAGTCCCTGAAGAACAAGGTCTTCTCCCTGAAGAAGTCACACAGCAGCTACGATCATGTGCGAGACCAGAGCGAGGACTCTAGCAGCTCAGCAACTGATAAGATGGAAATATCCACCACAGAGGGATCTCTTCTTGAAACACTGATGGGTAAGAAGCTGGTAAAGAAAAAGTCATCGGAGAAGATTGACGTTGCCAGCGAGTCAACTGAGTCAGTTCCTTTGGTCTGTAAATCAGCCAGCGCTCACAATCTGACGGCTGACAAGAAACCTCTTCACCCAAGGACATCCATGTTGCAGAAGTCACTCAGCGTCATTGCCAGTGCCAAAGAGAGGACCCTGGGTCTAGCGGGAAAGACCCAGTCCATAGAGGACCCCAACAAAAATATtcaacaaaagaacaaagaagCTAAAAGCCCTGTTGAAAATGAAGAGAACTATACCAAGATGATCATCAGCCAGTCAGTAGAATACAAGCAGACAGCTGGCAAAGCTGGAATAATGAAACATCAGGTTAGTGAAAGTCAACTGTCCATCTGCTCTGAGCCAGCGAAAGGCAAAGACGTTTATAATATTTCTGAGGTGTGTCCTTGGGAGTTAGAGGATTTGCCCACTCCCTCAGAGAACAGGGTACAAAAGCATGTGTCTATTGCTGCTGAAGAGTCCACCACGATCCACTCAAACAGCACCAAGGCAGCCAAACAGCAGAAACAGAAAGGCACAGGTCAGTCACCTTCATCAACCCGACGACCCAACCAGAAGCCCATCGACAGAGCAGATATCTGTTCTTGGGAGGAGGGTAGTAAAGAAAGCCAAGGTCAAACAGACGGGACAAAACCAAATTTCTCCAGTCAACCTGCTCAGTCTCAAATACAGACATCTACAGACAGAACCAAATCTCAAAAAGCAGATGTATGTCCATGGGACTTTGACGAATTGCCAAAAAAATCTATAGACTCAACTTACTACACTGATCAGGGCAGAAGCAAAACTACGTCTGCAGAGGTCAAAACCAAATCAAGCACAGCTGTGACGGACGTCAAAGGCAAGGGCACTATTCTAACTGAGGGAAAAGCAAAAGATATTCTTCCTGAGACAAAATCTTCAGGAAGCTCTCTGCAGACATCTTCCAAGGAAGACACCTGTCCATGGGATTACGAATCCACAAGCCCCACCTTGGAAAAGATTCCCAGCCCTTCTCAGGTTTCTAAAATGAAAGAGACCACTGCTACAAAGAAGGGTACAGCCCCTATGAGAACAttccagaaagaaaaagagaagacaaAGGGTACAGAAGATGAGAAAGTCAAAACAAAGTCAAGAGACAAGTCTTCTTCAGGTAAACCAACAGAGAGACCTCTCAGCCAAGCCAAACTGGCTGAGATTTGTCCTTGGGATGAGGACAGTAGTCATGACATGGGTGCgatggaaaaacagaaaagtccAAACACTGCAATAGGGAAAACCAAGCAAGCTGCTATATGTCCGTGGGATTTTGAAGATCCAGCAACAACTAAAGAAGTGACCAGAAACACTGGTTCCTCTATAGCGAAACAGAGAAGTCCAAATTCGAAAGGAGTTCCTAGCGGTGCCAAAATGGCAGACGTATGCCCATGGGACTTTGATGACCAAACGTCAACGAAAAAAGCATGACACTTGATCAATATGGACAACTAAAAACGTAGTTCTCATCGTACGTGCATTGTGTCATCTTATAAAACCCTGGAATACAAACTCTAGATATCATTTATGGTGACTTCTGGGAATAAAATTAAGTCGCACAAGCTGCCTttctttacaatatttttttttctttgtgctttttgaaaaaaaagaagaaattaaaactaaaaaaagcaacaaaatcaTCAAGCATTCCAGATTCTTACAAAGTACTCTTTAATCACAAACAGTAGTCTGAGAATTATGCAACTCTTTATGTGCAATGTAGAACAACCTGCCTTCCCTCATCACATATAtccttatttattattctgaatTTTCTTAATTCCATAATAGCTGCATCTGTAGCATGGTCGTTTTGACTATGTCAGTCATATGGGATTGTACAATTAATTACACGTTCCTGCAAAATCGGAGCGCCTGGAAATAATCTATGTATTTTAACAATACTCAGAAGGAGCATGCATGAATTGTCTTAGGATAAGCATGATCTTTGGTGTTTTATGTCAAAGTTGGTTTGGAAGTGACGTTTAAGAAATTGCCAAAGACAGAAGTGACGTACAACGGTATCGTGTGAGTAATACACAAGAGTACTCAAATGCATATCAAATGCAAATCTCTTTACATTTCTGTTGTGAACCCAATTCATGTGGTTGCTTGTGGGGAAATTAGCCTGTAGCACTTTAGTAACTAGTATATTCTCTGAAaaaaagaggtgtgtgtatggacATACTGTCACTGCATCCATGTTAATCgaattatttgtgtttatttatcgGGTCATTCTCACACGGAACGTGTATGTAACCTTCTGACACACATTGTCCACTATAGTTGTAATATTCCTTTAAGTCAAAACACCCTTTCAATGCTTCCAAATTTGCTGGTATGAATGTGCCTATATGAAGAGTCTTGTATCAGTCCTACGTCGTATTAAGGGAAAGCACAGCTCCTATCCCTGTCCTGTGTTTACCCAATTATACGCTGAGAGTCAAATAAGAGCCAAACCAACACATTTCATAACTGACGAAAATGCAAATGCAGTCATTTTAActggaattattggcacccttcaggaaaatgaatatataaaatgaataatacatgCCATGAgtgatattttaaacataaacatataaagtaAAGCCTCACCCCTGGTTCATATTAGcaagtgacagaaaaaaacagttgactattatatttagatatttttatatttatatattttacatacaacAGGGACTCACGATTTCTGAGCCGAAGCTACAAGCGACATTTGAACTGAGATCTTCTCAACTATATGCAAATTGCAaaaatgattcctcggaccaatcctatggcaTGTGGtacgacgtttcttcagttccccattCTCACTTACGTTCCCACCTGTAATTAGTTCCCATTTCCTGTTTGATGCACAAAATGTAAGAAAAGCGTATAACCCTGGTTTCATCTCACCCTGCCATATACTTCTCTTATTAAATGTGTAGAGACATTACGAAGATAAATAAAGCTTAGAAGGAAGTAGTAGAGATTGTAGGcacctgaacaggataaagtggatactgaagatgaatgagtgaatgaatgaatgatttcatCAATCTTCCCAAAAGCCCCTAAAGCGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19674 lncRNA downstream 56959 30175024 ~ 30175364 (-) True G16709
TU19591 lncRNA downstream 82735 30149342 ~ 30149588 (-) True G16629
TU19515 lncRNA downstream 279038 29873607 ~ 29953285 (-) True G16566
TU19531 lncRNA downstream 324899 29904478 ~ 29907424 (-) True G16582
TU19490 lncRNA downstream 433352 29797753 ~ 29798971 (-) False pcolce2b
XR_004578412.1 lncRNA upstream 46625 30379844 ~ 30382575 (-) True LOC117597677
XR_004578413.1 lncRNA upstream 46648 30379867 ~ 30382575 (-) False LOC117597677
TU19909 lncRNA upstream 303864 30637083 ~ 30637584 (-) True G16897
XR_004576931.1 lncRNA upstream 304630 30637849 ~ 30640024 (-) False LOC117595754
XR_004576936.1 lncRNA upstream 304630 30637849 ~ 30640024 (-) True LOC117595754
XM_026944840.2 mRNA downstream 24249 30193051 ~ 30208074 (-) True anxa13
XM_034303618.1 mRNA downstream 42133 30189555 ~ 30190190 (-) True LOC117597070
XM_034303621.1 mRNA downstream 68626 30115305 ~ 30163697 (-) True LOC117597071
XM_034304616.1 mRNA downstream 121021 30067523 ~ 30111302 (-) True myo3a
XM_026944833.2 mRNA downstream 171728 30026423 ~ 30060595 (-) True gad2
XM_026944739.2 mRNA upstream 5731 30338950 ~ 30344720 (-) True ptchd3a
XM_034305542.1 mRNA upstream 66936 30400155 ~ 30561913 (-) False kmt2ca
XM_034305564.1 mRNA upstream 66936 30400155 ~ 30561912 (-) False kmt2ca
XM_034305562.1 mRNA upstream 66936 30400155 ~ 30561912 (-) False kmt2ca
XM_034305536.1 mRNA upstream 66936 30400155 ~ 30561912 (-) True kmt2ca
trnaf-gaa other downstream 243033 29989218 ~ 29989290 (-) True trnaf-gaa
trnar-ccu_3 other downstream 1976006 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 1976756 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 1981195 28251056 ~ 28251128 (-) True trnar-ccu_1
trnam-cau other downstream 1986362 28245890 ~ 28245961 (-) True trnam-cau
trnah-gug other upstream 299847 30633066 ~ 30633137 (-) True trnah-gug
TU19913 other upstream 307479 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 452744 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 659850 30993069 ~ 30997169 (-) False telo2
TU20272 other upstream 659850 30993069 ~ 30996234 (-) False telo2

Expression Profile