RNA id: TU19909


Basic Information

Item Value
RNA id TU19909
length 502
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G16897
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30637083 ~ 30637584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCATTTGTTGAGGGTTGGGATATATTGGTATAACAGTCAGTTCTCTGtgttgatgtgttagaagcaggaaaaatgggcaagggaTGCTACATAAAGGTTCCTCTGAAAGTAACGGAACAGCAAGCTCAATTAgtctgtttttgctatacactgaagacgtttgggtttgaggtcaaaagatgaatatgagatgatggtttagaatttcagctttcatttcctgatttttatatctgtgttacacagattaaaacatggcaccttttggtATAGGCACAAAttctcttaaagtaaattaaacagcacttaatatttggttcatATCCCTTACTTGCAATAACTGTATCAAGCCAGCATACATACATCCCATATACATCGCTCAAAACAAGAGTAGCTGTTCATAGCTACTAATTCTTTAAACTATCAATTTAACAGgatacacctgggcaacaagaaacaccagtcacatgttccaacatacttcatcacttgaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578412.1 lncRNA downstream 254508 30379844 ~ 30382575 (-) True LOC117597677
XR_004578413.1 lncRNA downstream 254508 30379867 ~ 30382575 (-) False LOC117597677
TU19682 lncRNA downstream 303910 30332574 ~ 30333173 (-) False gpr158a
TU19714 lncRNA downstream 305470 30331397 ~ 30331613 (-) True G16747
TU19688 lncRNA downstream 387406 30249464 ~ 30249677 (-) True G16721
XR_004576931.1 lncRNA upstream 265 30637849 ~ 30640024 (-) False LOC117595754
XR_004576936.1 lncRNA upstream 265 30637849 ~ 30640024 (-) True LOC117595754
XR_004577837.1 lncRNA upstream 126001 30763585 ~ 30764477 (-) True LOC117596846
TU20022 lncRNA upstream 128605 30766189 ~ 30766709 (-) True G17000
TU20049 lncRNA upstream 204381 30841965 ~ 30889214 (-) True G17025
XM_026944717.2 mRNA downstream 50393 30582017 ~ 30586690 (-) True xrcc2
XM_034305542.1 mRNA downstream 75170 30400155 ~ 30561913 (-) False kmt2ca
XM_034305564.1 mRNA downstream 75171 30400155 ~ 30561912 (-) False kmt2ca
XM_034305562.1 mRNA downstream 75171 30400155 ~ 30561912 (-) False kmt2ca
XM_034305536.1 mRNA downstream 75171 30400155 ~ 30561912 (-) True kmt2ca
XM_026947949.2 mRNA upstream 332433 30970017 ~ 30982915 (-) True LOC113547558
XM_034308978.1 mRNA upstream 350710 30988294 ~ 31014649 (-) True telo2
XM_026947966.2 mRNA upstream 528842 31166426 ~ 31312036 (-) False ntng1a
XM_034308038.1 mRNA upstream 528842 31166426 ~ 31312036 (-) False ntng1a
XM_026947963.2 mRNA upstream 528842 31166426 ~ 31312036 (-) True ntng1a
trnah-gug other downstream 3946 30633066 ~ 30633137 (-) True trnah-gug
trnaf-gaa other downstream 647793 29989218 ~ 29989290 (-) True trnaf-gaa
trnar-ccu_3 other downstream 2380766 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 2381516 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 2385955 28251056 ~ 28251128 (-) True trnar-ccu_1
TU19913 other upstream 3114 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 148379 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 355485 30993069 ~ 30997169 (-) False telo2
TU20272 other upstream 355485 30993069 ~ 30996234 (-) False telo2
TU20251 other upstream 364825 31002409 ~ 31003309 (-) True G17199

Expression Profile