RNA id: TU20022


Basic Information

Item Value
RNA id TU20022
length 450
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G17000
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 30766189 ~ 30766709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAACACGGCAGCAGTTTAACTGCAAGTGCTTcaacacacagtgtttcagtTTTGGCCAGAAGGTACCAACTGCTGTGCCACAGCCAGCCAGTGAAGGGAATCCACAGTCAGCCAGTGAAGGGAATCCAGTGGGGAAGTCCAGAGCTGGTTGGGCAGTGGTGCATGCTCAGATATGATCAAGAGCTGTATCCAGGCATCATCCTTAGCACAGATGAAACACATGTGCAAGTGAAATGTATGCATCGTGTTGGGCCAAACCGATTCTTCTGGCCGGCTGGGGATGATATCCTCTGGTACCTGTTTGAGGATGTACTTGAAATCATTCCACCACCAAAGCCTGTGACAAAGCACCATGTTGAGATCTTGAAAGAGTTTATAATGTTCTAATGTATActatgttattgttgtttttcctgcAGTCGGGTTAATAAAACTCAGTTCAATTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577837.1 lncRNA downstream 1712 30763585 ~ 30764477 (-) True LOC117596846
XR_004576931.1 lncRNA downstream 126165 30637849 ~ 30640024 (-) False LOC117595754
XR_004576936.1 lncRNA downstream 126165 30637849 ~ 30640024 (-) True LOC117595754
TU19909 lncRNA downstream 128605 30637083 ~ 30637584 (-) True G16897
XR_004578412.1 lncRNA downstream 383614 30379844 ~ 30382575 (-) True LOC117597677
TU20049 lncRNA upstream 75256 30841965 ~ 30889214 (-) True G17025
TU20248 lncRNA upstream 221414 30988123 ~ 30990026 (-) False telo2
TU20249 lncRNA upstream 225181 30991890 ~ 30992853 (-) False telo2
XR_004579111.1 lncRNA upstream 232771 30999480 ~ 31001678 (-) True LOC117598443
TU20275 lncRNA upstream 262747 31029456 ~ 31029677 (-) True G17222
XM_026944717.2 mRNA downstream 179499 30582017 ~ 30586690 (-) True xrcc2
XM_034305563.1 mRNA downstream 204278 30400155 ~ 30561911 (-) False kmt2ca
XM_026947949.2 mRNA upstream 203308 30970017 ~ 30982915 (-) True LOC113547558
XM_034308978.1 mRNA upstream 221585 30988294 ~ 31014649 (-) True telo2
XM_026947966.2 mRNA upstream 399717 31166426 ~ 31312036 (-) False ntng1a
XM_034308038.1 mRNA upstream 399717 31166426 ~ 31312036 (-) False ntng1a
XM_026947963.2 mRNA upstream 399717 31166426 ~ 31312036 (-) True ntng1a
TU19913 other downstream 123215 30640698 ~ 30642974 (-) True G16900
trnah-gug other downstream 133052 30633066 ~ 30633137 (-) True trnah-gug
trnaf-gaa other downstream 776899 29989218 ~ 29989290 (-) True trnaf-gaa
trnar-ccu_3 other downstream 2509872 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 2510622 28255495 ~ 28255567 (-) True trnar-ccu_2
LOC117595698 other upstream 19254 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 226360 30993069 ~ 30997169 (-) False telo2
TU20272 other upstream 226360 30993069 ~ 30996234 (-) False telo2
TU20251 other upstream 235700 31002409 ~ 31003309 (-) True G17199
TU20760 other upstream 1233916 32000625 ~ 32052554 (-) True G17630

Expression Profile