RNA id: TU20335


Basic Information

Item Value
RNA id TU20335
length 3144
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G17277
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 31126733 ~ 31130151 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagcaatataattttattgtgcattatctacatatgtacagtattaCACAGCAGTATTTCGGGATTGCACAGGCCACTGTGgctcacatatacacaaatgcatacacacacacacacacacacacacagatctttGGCTTCAGTGAACAACAGACGCAAGAGTACCAATGGAATATTGACGGTCCTTTATAGACATATACAGCTTTCTGGTGCTGTTAGTGGCTCTAACAGGTTGGTCGAAAGATTACAAATGTACAATtacacaaggaaaaaaaaaaacatgcggCATTGAACACGGGAAAGACTACATAACGTTTATCTATTCAACCGTTCCACACAAAAGTGTGTTATTGACTCGTGGGAGGATTTCTTCAGTCTCTGCTAACCATCATCACACAGTGGGAAGGTCACACAagtacagagagaaagagtgaaaaaagatCCATGCACTGACATGTCTGAAATGACACACTGACATATAGAAGCATGGAATTGTGGGTAGATGTGAGATAACTCTTATCACAGTTCATCAGAAGCGTAGCTGAGGAGAGAAGGACAGTCCAAATGGATGGCTAGCGTAACAAACATACAGCGCAGATTATTATATATGTGTCAAATAACATTTGTGTGCTATAATGATGTTTATAAAAGGACAACGAATGCATCATTATGATTCCTTTGTATTTAACGAACGCATGTTTTAGCTTATGTTATTGGCTGTGTgagtgagaaacaggattaaccaatcaggatgcATTCTCCTGTTTCTGTTAGTTAAACTCTCAGCTCTCGGGGATATCGAGGTGATGGCAGATGAAGTAACACAGTTTTAACcacaggaggagaaagagaaagagtttgGATTTGGAGTTCTGGCATGGTCTGGAATGTTGTAGGAATGGTTCAGTGTGCTGGAATGATTACGATCAGGTCAGTGATTAGGATTGTTTTGGGATGGGATATTTCATTTTACTTAAGAATGGATTGATGTTTTTGAATTCTTTAGAAAGGGTTGGTTATCTGGGAATGGGTTGGTTATCTGGGAATGGGTTGGTTATATGGGAATGGGTTGGTTATCTGGGAATGGGTTGGTTATATGGGAATGGGTTGGTTATCTGGGACTGGGTTTGGTTATCTGCGAATGGGTTGGTTATCTGGGAATGGGTTGGTTATCTGGGAATGGGTTGGTTATATGGGACGTTCCAGGATGAGTAAGAGTTTATAGAGGTTCAGAAATGGGATATGTTCTGGAATAGCCGTCAGGTCAGTGCTCTAGAAGCTTCTACAAGGCTGTTGTTAAGTTGGTGGTTGGAATGGGTTCAGCGCTCTACTGTATTATAGAATAGGTTTGGTGTTGTAGCATGTTCTGGAACGAGTTTAAAacgttttgttttaaaatgttgtaaGATGGGTCAGTGTGCTGGATTGTCTAAGATCTAGTAGGTGTTTTGGAAGGTTTTAGGATAAATGGTTTAGAACAGATCACTGTTCATGAATGATCTAGAATGAGTTGGGTATCCCAACAGTTCTAGAATGAGTCTGTGTTATAGAGGTTCTAGCATGGGTTGGCGTTCTGGTATATTAAAGATCAATTTAATGTTTTAGGATTCTAGAATGTTCTTGACCCTTCTAGAATATCTTGGTTAGTAGGTATATTTCAGGATGGGTTTGGTGTTCTATAATGTTCTAGAATGCATTTGGTGTTCTGAGATGTTCTAGCATGAGTTTATATTATAGAGGTTCTAGAATGGGTTGGTTATCTGGGATGTTCCAGAATGAGTCTGTATTGTAGAGGTTCTAGAATGGGTTGGTTATCTGGGATGTTCCAGAATGAGACTGTATTGTAGAGGTTCTAGAATGGGTTGGTTATCTGGGATGTTCCAGATTGGTTGGTTTAAGAGGTTGTTAAATTGGATGTGTTCTGGATTGTCCTATGGGTCAGTGTCCTAGAAGGTTCTAGAAGGTTGTTAAATTGGTGTTCTGGAATGTTCTGGAATGTTCTGGAATGTGTGATCTACTCTTTAGATTAGACTCTCCTTTCACACTGGTGGTCCATGTAGACAGAGAGCGGAGCTGAGCTGTAAAGTCTCTACCTGCTCGGCAGGAGGTTAAAGCCTGAGGTCTGTATTGTAGCAGAATGAGGATTTAGCGTACAAGGCTACTGGGAGAAACTAAAAAGAGGAAGCGTCTTTAAAGGCTGGTACTGGATAGTGATGTGATCGTGGAATGCGAGACAATTTATTAATCCATTAATGctgctgccatctagtggcaTCAACTCCACACTACAGCCATGCTCTGAGACGCAAAACTGTGATCAAATTACTGAACAAATGAGACCGCTTTGTTGTTTTACGCGCAAAAAATATCTGCAAAACTCCTTTTATGATCCTTCGCGTTCTTAATCTCGTCTGTAACATGACTGTGAAAACTGATGCCGaaaaaagatattaatttaTTCGAAAGCTGTATTTCAGTTTTGGGCTGAAATGGACTGGCTGGAGGTTCTGGTGGCTGGAAAGTGGGTCAGATAAGAGCAGGGAGTGTGGGCTGTCAATCATTTACTATCGGGATACTGGATTAAAAATGCAGCGGATGCACTATCTAGAGGTGAgagtcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtggatctgtcagctcgctctctgtctctcaaatcagataaacatgtccttacaaGATAAGCAGCTACAACGGAGgacaagaaaacacaaacatccACACAATAAATCCAGCTGATTAGTGACAATGTCaaagatacatacacacacacacacacacacacacacacacacacagtcacatacaTGCCTGTGGGGGTTCTTACTTCCTCCCATcattcacagtaacacacacattcacaatcacacacacacacaaacacacacacacacacaaacaccttcaCTGGTGACTGCTTTGCTGACAGCAGAGGATTCTGGGTAAGTGCTGAGTGTCCCTGCTGAGACACTTCGAGACGCCTTTCAGACTTGTGTTAAAACAGGACGAGTTCATGGTTCAGTCCAGTTCAGcatgtaaacataaaaatgtcCTTTTTACTTCCTTCTGTTGGTCTGTTTTTCACTCCTCTCCTTCTTCTACGTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20318 lncRNA downstream 28768 31096832 ~ 31097965 (-) True G17265
TU20275 lncRNA downstream 97056 31029456 ~ 31029677 (-) True G17222
XR_004579111.1 lncRNA downstream 125055 30999480 ~ 31001678 (-) True LOC117598443
TU20249 lncRNA downstream 133880 30991890 ~ 30992853 (-) False telo2
TU20248 lncRNA downstream 136707 30988123 ~ 30990026 (-) False telo2
TU20352 lncRNA upstream 34860 31165011 ~ 31166371 (-) True G17285
TU20405 lncRNA upstream 182251 31312402 ~ 31312656 (-) True G17338
TU20425 lncRNA upstream 232079 31362230 ~ 31362461 (-) True G17347
XR_004578747.1 lncRNA upstream 283606 31413757 ~ 31450541 (-) True LOC117598001
TU20479 lncRNA upstream 454590 31584741 ~ 31587833 (-) False rnpc3
XM_034308978.1 mRNA downstream 112084 30988294 ~ 31014649 (-) True telo2
XM_026947949.2 mRNA downstream 143818 30970017 ~ 30982915 (-) True LOC113547558
XM_026944717.2 mRNA downstream 540043 30582017 ~ 30586690 (-) True xrcc2
XM_034305550.1 mRNA downstream 564822 30400155 ~ 30561911 (-) False kmt2ca
XM_026947966.2 mRNA upstream 36275 31166426 ~ 31312036 (-) False ntng1a
XM_034308038.1 mRNA upstream 36275 31166426 ~ 31312036 (-) False ntng1a
XM_026947963.2 mRNA upstream 36275 31166426 ~ 31312036 (-) True ntng1a
XM_026947965.2 mRNA upstream 36275 31166426 ~ 31312036 (-) False ntng1a
XM_026947947.2 mRNA upstream 195763 31325914 ~ 31327457 (-) True prmt6
TU20251 other downstream 123424 31002409 ~ 31003309 (-) True G17199
TU20271 other downstream 129564 30993069 ~ 30997169 (-) False telo2
TU20272 other downstream 130499 30993069 ~ 30996234 (-) False telo2
LOC117595698 other downstream 337323 30785963 ~ 30789410 (-) True LOC117595698
TU19913 other downstream 483759 30640698 ~ 30642974 (-) True G16900
TU20760 other upstream 870474 32000625 ~ 32052554 (-) True G17630
trnar-ccg other upstream 888944 32019095 ~ 32019167 (-) True trnar-ccg
trnar-ccg_1 other upstream 948392 32078543 ~ 32078615 (-) True trnar-ccg_1
trnar-ucg other upstream 955578 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_2 other upstream 956326 32086477 ~ 32086549 (-) True trnar-ccg_2

Expression Profile