Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU21279 |
| length | 245 |
| lncRNA type | read_through |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G18087 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 32538754 ~ 32608561 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578529.1 | lncRNA | downstream | 181000 | 32355196 ~ 32357754 (-) | True | LOC117597779 |
| TU20998 | lncRNA | downstream | 184680 | 32353860 ~ 32354074 (-) | True | G17850 |
| TU20762 | lncRNA | downstream | 440976 | 32053783 ~ 32097778 (-) | True | G17631 |
| TU20608 | lncRNA | downstream | 639998 | 31898557 ~ 31898756 (-) | True | G17498 |
| TU20551 | lncRNA | downstream | 720117 | 31818258 ~ 31818637 (-) | True | G17441 |
| TU21339 | lncRNA | upstream | 32794 | 32641355 ~ 32645315 (-) | True | G18133 |
| TU21342 | lncRNA | upstream | 41663 | 32650224 ~ 32650785 (-) | True | G18136 |
| TU21313 | lncRNA | upstream | 75956 | 32684517 ~ 32729038 (-) | True | G18110 |
| TU21352 | lncRNA | upstream | 98895 | 32707456 ~ 32708126 (-) | True | G18143 |
| TU21353 | lncRNA | upstream | 102140 | 32710701 ~ 32710972 (-) | True | G18144 |
| XM_034306549.1 | mRNA | downstream | 293143 | 32238940 ~ 32245611 (-) | True | enkur |
| XM_026947943.2 | mRNA | downstream | 300941 | 32219895 ~ 32237813 (-) | True | prtfdc1a |
| XM_034300539.1 | mRNA | downstream | 301320 | 32219895 ~ 32237434 (-) | False | prtfdc1a |
| XM_026947923.2 | mRNA | downstream | 351261 | 32115502 ~ 32187493 (-) | True | LOC113547543 |
| XM_034304523.1 | mRNA | downstream | 580078 | 31932469 ~ 31958676 (-) | False | arhgap29a |
| XM_026947934.2 | mRNA | upstream | 1458 | 32610019 ~ 32622734 (-) | True | tmem204 |
| XM_034304830.1 | mRNA | upstream | 79036 | 32687597 ~ 32696711 (-) | True | fam234a |
| XM_034304834.1 | mRNA | upstream | 267909 | 32876470 ~ 32895850 (-) | False | ccdc78 |
| XM_026909777.2 | mRNA | upstream | 267909 | 32876470 ~ 32895850 (-) | True | ccdc78 |
| XM_034304677.1 | mRNA | upstream | 291308 | 32899869 ~ 32918570 (-) | True | LOC113523757 |
| trnar-ccg_3 | other | downstream | 331057 | 32207625 ~ 32207697 (-) | True | trnar-ccg_3 |
| trnar-ccg_2 | other | downstream | 452205 | 32086477 ~ 32086549 (-) | True | trnar-ccg_2 |
| trnar-ucg | other | downstream | 452953 | 32085729 ~ 32085801 (-) | True | trnar-ucg |
| trnar-ccg_1 | other | downstream | 460139 | 32078543 ~ 32078615 (-) | True | trnar-ccg_1 |
| trnar-ccg | other | downstream | 519587 | 32019095 ~ 32019167 (-) | True | trnar-ccg |
| TU21711 | other | upstream | 962818 | 33571379 ~ 33571830 (-) | True | G18432 |
| TU22331 | other | upstream | 1406487 | 34015048 ~ 34016030 (-) | False | G18848 |
| TU22333 | other | upstream | 1406487 | 34015048 ~ 34037333 (-) | False | G18848 |
| TU22337 | other | upstream | 1406487 | 34015048 ~ 34037333 (-) | True | G18848 |
| TU22338 | other | upstream | 1406487 | 34015048 ~ 34016030 (-) | False | G18848 |
