RNA id: TU21366


Basic Information

Item Value
RNA id TU21366
length 768
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G18157
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 32799683 ~ 32808266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaacatctttatttttgtaaatgtcattattgttgttattatcggtgtgtgtgtttgagtataATACACAACCCCATTACATACTGGAGCTTAGAAGATATAGTGTTAGAGctagagttttgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtggtcagtcgTCCTGCACCACCACAACATTGCCGTGGATCTCATACTCCACGGTGCTCCAGTCGAACACGTTTCCACGTGGCACTCTGTGTTTCAGGTTGGCGTACAGAGCGTTGATTTGCATGCGTGACAGCGCAAAGTCCCACATGTTCACATCCGTCATCTCACCCACGAAGCTCTGCGTCACCTCAAAGCCCCCCAGATGTGTGTCAGGGTCCTGGCCGAGCAGCACAGTGCCACGTGGACGGATCTTGTGGCCCGGTCTGTAGATCTGTCGTGTGCTGCGGCGTCCGTCCACATGGAACGCGGCGAGTCCGGTGCTGGAGTCCCACGTCAGACACAGGTGAGTGCGGAAGCTGGAGAGGGGTGTGAGGCGGAAAAGCGCACCGTCTCCGCCCAGGTAGAATGAGATCCGTCCATCCTTCTCGCGCCACATGTTGAGCTCATCTGTGCTGTTGCTGCGATACGCAAAGAGGATGACCTGTCGCTCGTCCTGCAGCTCAGTAGAGATGCGCATGCACAGAGTGAATGCTGAGAGAGCAAGAGGTTTCTGAGGAGATAGCTTGACAAAACTGAAATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21313 lncRNA downstream 70645 32684517 ~ 32729038 (-) True G18110
TU21353 lncRNA downstream 88711 32710701 ~ 32710972 (-) True G18144
TU21352 lncRNA downstream 91557 32707456 ~ 32708126 (-) True G18143
TU21342 lncRNA downstream 148898 32650224 ~ 32650785 (-) True G18136
TU21339 lncRNA downstream 154368 32641355 ~ 32645315 (-) True G18133
TU21393 lncRNA upstream 106561 32914827 ~ 32955703 (-) False LOC113523757
TU21396 lncRNA upstream 114736 32923002 ~ 32943136 (-) True G18176
TU21383 lncRNA upstream 135470 32943736 ~ 32949185 (-) False G18170
XR_004578297.1 lncRNA upstream 135694 32943960 ~ 32945004 (-) True LOC117597511
TU21386 lncRNA upstream 141029 32949295 ~ 32951342 (-) True G18170
XM_034304830.1 mRNA downstream 102972 32687597 ~ 32696711 (-) True fam234a
XM_026947934.2 mRNA downstream 176949 32610019 ~ 32622734 (-) True tmem204
XM_034304845.1 mRNA downstream 224252 32562537 ~ 32575431 (-) True LOC113547549
XM_026947939.2 mRNA downstream 260336 32521620 ~ 32539347 (-) True LOC113547553
XM_034306549.1 mRNA downstream 554072 32238940 ~ 32245611 (-) True enkur
XM_034304834.1 mRNA upstream 68204 32876470 ~ 32895850 (-) False ccdc78
XM_026909777.2 mRNA upstream 68204 32876470 ~ 32895850 (-) True ccdc78
XM_034304677.1 mRNA upstream 91603 32899869 ~ 32918570 (-) True LOC113523757
XM_034304808.1 mRNA upstream 115601 32923867 ~ 32953931 (-) True LOC113524649
XM_034304680.1 mRNA upstream 150355 32958621 ~ 32972206 (-) True LOC117597388
TU21290 other downstream 202878 32589902 ~ 32596805 (-) True G18097
trnar-ccg_3 other downstream 591986 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 713134 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 713882 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 721068 32078543 ~ 32078615 (-) True trnar-ccg_1
TU21711 other upstream 763113 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 1206782 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 1206782 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 1206782 34015048 ~ 34037333 (-) True G18848
TU22338 other upstream 1206782 34015048 ~ 34016030 (-) False G18848

Expression Profile