RNA id: XM_026910981.2


Basic Information

Item Value
RNA id XM_026910981.2
length 1523
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC113524637
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33531542 ~ 33546245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttttcaaACAGGAGGGGAACAAAGTCACCTGGGAACTGAGAGCTGCGTCTCACGGAGAGCTGCGAGACGAGAGACAACActcagATTTCTCCACATGGCTCCTCAGAAGAATAAACGGCGCAGGCTGAATGTGGCCGGTTCTCGCCAAAACCCGCAGAGCTTTCAGGCTCAGGATTTTCTCAAACTGCGTCAGAAATGTCTGAGTAGTAACGCCAAGTTTGTGGACGATAAGTTTCCTGCAGATCGGCGAGCCATCGGCTCGGGCCTGCTGCCGCTTACCAAAGTGGGCAAAGTGGTGTGGAAGAGGCCTTCGgaactAGTGGATGATCCTTGTCTTATTGTAGATGGCGAGTCCAGGTTTGACTTCTCTCAAGGAGATCTTGGAAACTGCTGGTTTTTGGCTGCAATTGGAGCAATAACATTCCAGAAGGACGTCATGGACCAAGTCATTCCTGACGATCAGTCGTTTGATAAGGATTATGCAGGCATATTTCATTTCAGGTTCTACAGAAACGGGGAGTGGGTGGATGTTGTGATAGACGACCAGTTACCAACACTCAGCGGACAACTGATCTTCGTTCACTGCAAAACCCGTAATGAGTTCTGGCCTGCGCTGCTGGAGAAAGCCTACGCTAAAGTGTGTGGTTCGTATGCAGCAATGAATGGTGGCTTTATATCCGATGGTCTGCATGATTTCACCGGCGGAGCGTACAAAACATTCAACCTGACCAAAGCTTCTGAAAATCTCTGGGATCTGATGGATCAGGCAGTGAAGCGCAGAGCTGTAATGGGGTGTGGAACACCTCCAGGGccCACTCCCGCTAACACGGTGCTTCCCAACGGCATCGTGCAGGGACACGCCTACACCATTACTGGAGTCACCAAGgttAAGTCTCAGGGTAAGATGGTGAGACTGGTGAGACTGCTGAACCCCTGGGGAAAAGGAGAGTGGAAGGGAGACTGGAGTGATAAatcaCCTCTGTGGAAGGAGGTGAGCAGCCAGGATCGTGAAACATGGCTGGAGGATAAAAACAATGGAGAGTTTTGGATGTCGATGGAGGATTTCTGCAGGAGTTATGATGAGCTGGATATCTGCTGTATTGGTGTTGACTTTCTCATTTAAGCCACTGCATTCTGTCTATATTTCAGTAAACTATATATCTGTGTATAATCTGACATTTTCCTTACTGACCACAGAATAGCTTGCTGTACTGCATTTCACTTCTGTCCTTAagttctgttcattttcatttaataattttgacttTCATTTACtacatttcaaaaaataaattctacagTACAAATAGTCTACATTATAAACAGATCAGTTAGTCTACGATCTACGTAATTATTTAAAGTCATACAGTAAGGCAGGATGTGCATTGCTCTGCTTTAGGGGCGTGTTTACAATGTAGGATGTGAATGAATCTGTCGATCAtggatttcaaataaattatcTTCTATTCAAGATTATTACTCTCATAAAGGTAGTTCTAAAATAAAGGCATTCTGAGttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578366.1 lncRNA downstream 34091 33493740 ~ 33497451 (-) True LOC113524631
XR_004578370.1 lncRNA downstream 43328 33486894 ~ 33488214 (-) True LOC117597603
TU21699 lncRNA downstream 49717 33475421 ~ 33481825 (-) True G18425
TU21697 lncRNA downstream 80622 33449578 ~ 33450920 (-) True G18423
TU21692 lncRNA downstream 89322 33441675 ~ 33442220 (-) True G18418
TU21720 lncRNA upstream 69179 33615394 ~ 33616366 (-) False dnah3
TU21728 lncRNA upstream 172728 33718943 ~ 33719150 (-) True G18446
TU22264 lncRNA upstream 311493 33857708 ~ 33858166 (-) True G18794
TU22266 lncRNA upstream 313723 33859938 ~ 33860410 (-) True G18796
TU22269 lncRNA upstream 315987 33862202 ~ 33952846 (-) True G18799
XM_034304697.1 mRNA downstream 3744 33514495 ~ 33527798 (-) True LOC117595702
XM_034304692.1 mRNA downstream 24555 33499284 ~ 33506987 (-) True LOC117595708
XM_034305482.1 mRNA downstream 59275 33461778 ~ 33472267 (-) True LOC113524648
XM_034305506.1 mRNA downstream 78153 33428924 ~ 33453389 (-) True LOC117597600
XM_026946418.1 mRNA downstream 204989 33319864 ~ 33326553 (-) True fgf21
XM_026910975.2 mRNA upstream 3072 33549287 ~ 33567633 (-) True LOC113524634
XM_034304702.1 mRNA upstream 26538 33572753 ~ 33616199 (-) True dnah3
XM_026910979.2 mRNA upstream 83823 33630038 ~ 33643243 (-) True kcnj12a
XM_026911801.2 mRNA upstream 174601 33720816 ~ 33746236 (-) False ntn2
XM_026911802.2 mRNA upstream 174601 33720816 ~ 33746236 (-) True ntn2
TU21290 other downstream 934737 32589902 ~ 32596805 (-) True G18097
trnar-ccg_3 other downstream 1323845 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 1444993 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 1445741 32085729 ~ 32085801 (-) True trnar-ucg
trnar-ccg_1 other downstream 1452927 32078543 ~ 32078615 (-) True trnar-ccg_1
TU21711 other upstream 25164 33571379 ~ 33571830 (-) True G18432
TU22331 other upstream 468833 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 468833 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 468833 34015048 ~ 34037333 (-) True G18848
TU22338 other upstream 468833 34015048 ~ 34016030 (-) False G18848

Expression Profile