RNA id: XM_026911803.2


Basic Information

Item Value
RNA id XM_026911803.2
length 3798
RNA type mRNA
GC content 0.45
exon number 7
gene id ntn2
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 33720816 ~ 33746236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGCTGTGTGTTGCAGTGATTTAGGGAGTATTCATCAAAGGGACCAAGCAACTACACTCCTGACTAAGgactaaacacaaacattccTGAAGCAAAGAATTGTCCTGAACCACTGCTGCAGAGATCACACCCACCCACATAACAGTCTCCGCCACTACTGCAGATCTGCAGTCTTCTCTTCCTTTCAGATACTTTGTATCATCTCCAACATGAAAGACTTTTGTGAGCTTCTATTGGTCTGTTGGTTGGTGGGAGTGGCTTCAATATTTCCGGAAGCCACCGGCCATGAAGCAAACCCTTTCTCTGTGCAAGCATCATCCACTGACCCCTGCTACAGTGAATCAGGTGCCGCCCGCTACTGCATTCCAGAGTTTGTTAACGCAGCATTCGGTCAGGAAGTGGTTGCATCGAGCACCTGTGGCCATCACGGCTGTGAGAGCACCCACCTGACTGATCTATACTCCGCCCAGAACCTCACCTGCTGGCAGTCGGAGATGCTTCGGTCGATGCCGTTCAACGTCACACTGACACTTTCGCTAGGAAAGAAATTTGAAATCACTTACATTAGCTTACATTTCTGTTCGGAGAAACCAGATTCAATGGCTATTTATAAAAGCATGGATTATGGACGTAGCTGGAcaccatttcagttttattcttcTCAGTGCCGGCGAGTTTACGATCGCCCGAACAGGGCAGAAATCACCAAACTCAATGAGCAGGAGCCACTGTGCATGGAATTGCCCAACAGTGCTGACAACAGCAATGCCATCCTCGTGTTTAGCACATTGGATGGACGACCTTCAAGAACAAACTTCGTCTCCAGCCCTGTTCTCCAAGATTGGATCACTGTCACCGACATACGTGTGACCTTTGCCCGCCCAAAAATGAGTAAAGACGTGCGGGAACCTGCCTACTTTTATGCAGTGTCAGATTTCCAGGTGGGCGGCAGATGTAAGTGTAATGGCCACGCCCACAGATGTATAAGGGACAAAGAAGGGAAGATGGTCTGTGACTGCAAACACAACACGGAAGGACCTGAGTGCGACCGATGCAAACCGTTCCACTACGATCGTCCATGGCAGCGTGCCACGCCCAAAGAAGCGAACGAGTGTCTGCCATGTAACTGTAATCTACACGCACGGCGCTGCAGGTTTAACATGGAGCTGTATAAGTTATCAGGACGAAAGAGTGGAGGCGTGTGTATGAACTGCAGACACAACACGGCTGGACGACACTGTCACTACTGCAAAGAGGGCTACTACAGAGACATGAGCCGACCAATCACACACCGCAAAGCCTGCACAGcgtGTGACTGCCACCCGGTGGGAGCCGCAGGTAAGACGTGTAATCAGACGTCTGGTCAATGTCAGTGTAAAGACGGAGTGACTGGACTCACCTGTAACCGCTGCGCTAAAGGCTACCAGCAGAGCCGCTCACCTGTAGCCCCCTGCATCAAGATTCCTACTGTTAACCCAACAGCACTAGTGAGCAGTACAGAGGGACCTGCAgACTGTGAGTCCTATTGCAGACCAGCCAAAGGCAACCTGAAGATCAACACAAAGAAATACTGCAAGAAAGACTATGcCGTCCTGGTGAGTGTGTTGGACATGGAGACGGTGGGTGACTGGGCAAAGTTCTCCGTCAGCTTAGTGTCAGTGTATAAGAGCCGAGAGCCGCTGAAGAGAGGCGAGAACACGCTGTGGGTGCAGATGAAGGATTTGGCGTGTAAATGTCCACGCATCCACATGGGAAAACGCTTCCTCATCTTGGGCTCGGGCGGGGGCGGTGCCAGCGCAGAGAGGGCGGGGCTTACAGCAGATAAAAACAGCCTGGTCATACAGTGGAGGGACATCTGGACTCGACGCCTGCGCAAGTTCCAGCGCAGGGAGAAAAAGGGCAAGTGCAGCGCTGCGGAACACAGCCCTGAAGCCTGACCTTTGCCCccgtgtgtgtgtagactgttGGTCAACCTTTTGAAGGGACcgttaaaaagaaagagactgCTGCAGGAACCATGAtcatttcatacacacacacacacacacacacacacacacacagaggtgctCTCAGTTTTCAAATCTCAAacatgcatcatcatcatcatcatcatcattcttatGGGACTGAAGAACTTTCTAAAGCTTTTcatatctgtgtatgtgtgtgttatacagtgtgcTAGAGTGAACTTCATTAACAGACAAAGTAGATCATTCGTTCTCTTAACCACcttcacacactgacctgctcTGGTCAACGATCTTCTGGGTTCTCAGGAACATTCTGGAACATCTTTAGCTGAACTCTAGGACACGTTTCAGAAATAACCTGATTTCCCGAACATTTTTGAATGTCAGCTAAGTTGCAGAAAAATTTTGAATGTCAGCTGAGTTCTACAAGACCTTCACAATGTGCGATGAGTTTTAGCACGTATTTAGAATGCCAACTGTAACAGCTATAACACCAGCTGAATTCTAAGAAGCTTAGACCTCGACATAATTAACCTGCTAGAGCTCTAGAACACTTTCTGAGGTTGGCTAAATTACTGAAAACATTCAAACATCAGCTGGGTTCTAGAACACCTTCAGAATGTGAGATGCGTTCTAGAATGTTTTTAGAAGGCCAGCTGTTTTCTGGAACACCAGCTGAATTCTAGAACACTTTCCAAATGTCAGCTAAATGGTTGAAAACCTTTGAACATCAGCTGAGTTCTAGAACACCTTCAGAAAGTGAGACAATTTTAGAGCATGCTTAAAATGGCAACTGTGTTCTAGAACACCAGCTGAATTCTGGAACTCTTTCCAAAATGAGCTGAGTTTTAGAACACCTTTAGAGAGTCACATGGGTCTAGATTACCATTCAAAGGTCACTGAGGTTCTAGAACACTTTTGTGAATGTCAGATGAGATCTTTAATGAATAATCAGGGTTCTAGAACAATTGAATATCATCTAAGTTCTACAATGGTTTTGGAAAGCAAGTTGAGTTCTAGTTCATGTTAAAACTGAGGCCTAGCATGCCTTTTGTCATATCTGAATTCTAcatcaaattttattattaagcaGGGTTCTAGAACATTTTTAATGTCAGACGAGTTCTAGAATGCTTTAAAAATTCAGTGAAGTTCTAGAATGCTTTTCAAATGTCCGCTGTTCTAGAAGGCTTTTCGGAAATAACCTCAGTTCTAGGACACTTTTCAGACATCAGCTAAGTTGttgaaaatgtacaaatgtctAGGTCTAGAAGTTCTAGAAGAGTTTTCAAATGTCAGTTGAGTTCTAGAACACTTTCGGATATTCAGCCTTTGTCTAGAACTGCAGTTGGTTCTAGATTTCCTACCTTCTCCCTTACTGAAGTCtggggaaacacacacagcaggaacaCTCACACATAGCTTGGTTCATGAACAGATCtgtgaaatgtttctgttttattcctgagCTACATTAATGTTGGATTGTTCTGTATGTCTGCTTCCTGATTGGCCAGTGAGTTCCTGTTGCCTGGCAACCATCCACCTGCACTGGCGctgtaaatatgaacaaatatatCTGATGTGTTTGTTGTTATAAAGTGACTGACCGGAGAGAAAGTGTCACTCTCTGCATagttcatatgtgtgtgtgtatgtgtgtgtgtatatgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtggagtgacaCACTTCCATCTCTCACTATTTTCACTGCCATGACCACTGACTGTTTAATCCCACACCACAATAAATTATTAGTTAAACATCTgtgttttttcacttttcttgctgtgtg

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21728 lncRNA downstream 1666 33718943 ~ 33719150 (-) True G18446
TU21720 lncRNA downstream 104450 33615394 ~ 33616366 (-) False dnah3
XR_004578366.1 lncRNA downstream 223365 33493740 ~ 33497451 (-) True LOC113524631
XR_004578370.1 lncRNA downstream 232602 33486894 ~ 33488214 (-) True LOC117597603
TU21699 lncRNA downstream 238991 33475421 ~ 33481825 (-) True G18425
TU22264 lncRNA upstream 117361 33857708 ~ 33858166 (-) True G18794
TU22266 lncRNA upstream 119591 33859938 ~ 33860410 (-) True G18796
TU22269 lncRNA upstream 121855 33862202 ~ 33952846 (-) True G18799
TU22316 lncRNA upstream 239278 33979625 ~ 34049648 (-) True G18839
TU22325 lncRNA upstream 262680 34003027 ~ 34005760 (-) True G18846
XM_026910979.2 mRNA downstream 77573 33630038 ~ 33643243 (-) True kcnj12a
XM_034304702.1 mRNA downstream 104617 33572753 ~ 33616199 (-) True dnah3
XM_026910975.2 mRNA downstream 153183 33549287 ~ 33567633 (-) True LOC113524634
XM_026910980.2 mRNA downstream 174571 33531542 ~ 33546245 (-) True LOC113524637
XM_034301538.1 mRNA upstream 29268 33769615 ~ 33771845 (-) True nog2
XM_034304704.1 mRNA upstream 31972 33772319 ~ 33811365 (-) True LOC117597391
XM_034304709.1 mRNA upstream 86176 33826523 ~ 33846916 (-) True LOC113525322
XM_034311355.1 mRNA upstream 279596 34019943 ~ 34025608 (-) True nubp2
XM_034308105.1 mRNA upstream 424773 34165120 ~ 34176994 (-) True LOC113525220
TU21711 other downstream 148986 33571379 ~ 33571830 (-) True G18432
TU21290 other downstream 1124011 32589902 ~ 32596805 (-) True G18097
trnar-ccg_3 other downstream 1513119 32207625 ~ 32207697 (-) True trnar-ccg_3
trnar-ccg_2 other downstream 1634267 32086477 ~ 32086549 (-) True trnar-ccg_2
trnar-ucg other downstream 1635015 32085729 ~ 32085801 (-) True trnar-ucg
TU22331 other upstream 274701 34015048 ~ 34016030 (-) False G18848
TU22333 other upstream 274701 34015048 ~ 34037333 (-) False G18848
TU22337 other upstream 274701 34015048 ~ 34037333 (-) True G18848
TU22338 other upstream 274701 34015048 ~ 34016030 (-) False G18848
TU22422 other upstream 525967 34266314 ~ 34270284 (-) False LOC113524641

Expression Profile