RNA id: XM_026939589.2


Basic Information

Item Value
RNA id XM_026939589.2
length 2034
RNA type mRNA
GC content 0.43
exon number 10
gene id fdps
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22103097 ~ 22110703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAATACCCCAAAGCCCCTCAGACATGTGGGACGTCGGGGCTTTTCTTACGGCACTCATCAGGTAAAATAAAACTGCCCTCACAACTGCCAGAGTAATGTTTTGGCACTGCCATTAGCTCAAGGCAAGGACAAGCACAACATGGGAGACTGCAGTAAAGCTGTCCACTTGTCAGACCCACAGCTTTTTGACAGATACTTTGAGAAGCTACTGTGTGAGTTGACAGAGCAGGATTTCACAGACCCAGTACTTGCTGATGCTCTCAAGAGGCTCCGAGAGGTACTGCAGTACAATGCCACAGGAGGCAAGAGGAACCGTGGCTTGTCTGTGATTGGCTCACTGCGTGAGTTGGTCCCGCCCTCCAAGCTATCACCTGAAGAAGTGGAGCGTGCCCTGTTGGTTGGATGGTGCATTGAACTGctGCAAGCTTTCTTCTTGGTAGCAGATGATATAATGGATGCATCTTTAACACGGAGAGGTCAGCCATGCTGGTATAAGAAGGAAGGCATTGGCCTGGATGCTATTAATGACGCTTTTCTCCTGGAGGGGTCCATCTACCGCCTGCTGCGTAGGCATTGCAGAAGGCAGCCCTACTATGTCCATTTGTTGGAGCTTTTTACTGAGACATCGTTCCAGACAGAGCTGGGGCAAGCCCTCGATCTGATGACTGCTCCCCCAAACAAGATCGACTTAAACCGTTTTACCATGGACAgGTATAAAGCCATAGTGAAGTACAAGACTGCATTCTACTCTTTTTATCTTCCAGTGGCCGCAGCCATGTACATGGCAGGAATTGACAGTGAAGTGGAACACAACAATGCTAAACACATCTTGCTTGAAATGGGGGAGTTCTTTCAGATTCAGGATGATTACTTGGATTGCTATGGTGACCCTGCAGTAACAGGCAAGATTGGCACTGACATCCAGGACAACAAGTGCAGCTGGCTTGTGGTGACAGCACTGAGGGTGATGACCCCTGAGCAGAGGGTGGAGCTAGAGGCATGCTACGGCCGGAGTGATGCTGAGAGTGTGGAGCGAGTGAAGGCACTGTACGACACTCTGGAAATGCCTCTCCGATACCACCAGTACGAGGAAGAGAGCTACCTGCGACTCCAAAACCTCATCCAGCGGCATGCTCAAAACCTTCCCCATGCTGTTTTTCTTAACTTTGCCAAGAAAATCTATAAAAGGAACAAATGaggcatgatttttttttttttttgcaagagcATGGAAAAGTATGTAAAGTATGTTTAgtgcaatacagcaaaaaaaggaACGTAGTGTATTTGATCAGTGGTGTAAATATGTTCTCAAGAATATAGACATGTATATCTTAAAAActttagaaatgtgtttttttttcccaaacatATATTGGACTTTGAGACAGCCCAAAATGAAATGAGATGTTTTGAGAGATGTATTTCAATCTAGAAAGAAGCTGGACTAATATTCAAACTGTCAGTTGTTATCAGCTCTGATAGCTGGAATGTTACACTTGTAAATTGTCCAAACCAaataatttaattgtattttttatagaATTATAGTTGTTCATTCAGTAAGAGAAACAGCAGTCCTGTGCAAATGGAATTGATGAAATGTAGCTTTTCATACTTTTCataatatatttcagtttaagGCAGAGGGAAACAAAATGTTGGTCATCAGGCAGTGATTGGTACCGATCTGATCCGTCACTCTGTTCTCCTCAGTGGGTTCTTTATTTGGCAGTGTGCATTGTTTAAAGACTAAACAACTATCATCCACTTTCTGAAACTCGAAGTAGAAATCTAAACTGTTCATCTGTTTACCAACCTGTTTTTCTGCCAAAGAAAATGTCAGTGGTAGGATAAATAGATCTTTCTGGTGGGAACTGCTTAAAATaagcaaatcagaaatgaattACTGTGAAAACTACTTTTTAAAGTAGTGGTATTTTTAATATACACCTGAAATGGTGCTGTGTTTCAAATCCCAGCCACTTACTGTCAACCTGGATGATATCAATAAAAAAGAGGGTTACATGA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14683 lncRNA downstream 142798 21872276 ~ 21960299 (-) True G12375
XR_003404323.2 lncRNA downstream 165312 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA downstream 165313 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA downstream 165314 21934683 ~ 21937783 (-) False LOC113542638
TU14687 lncRNA downstream 172954 21927459 ~ 21930143 (-) True G12377
TU14840 lncRNA upstream 222422 22333125 ~ 22334604 (-) True G12498
TU14995 lncRNA upstream 577517 22688220 ~ 22689214 (-) False aicda
TU14997 lncRNA upstream 579273 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 580268 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 580585 22691288 ~ 22691526 (-) True G12642
XM_026939833.2 mRNA downstream 2003 22087349 ~ 22101094 (-) False rusc1
XM_026939831.2 mRNA downstream 2003 22087349 ~ 22101094 (-) False rusc1
XM_026939830.2 mRNA downstream 2003 22087349 ~ 22101094 (-) True rusc1
XM_026939693.2 mRNA downstream 57431 22041135 ~ 22045666 (-) True dap3
XM_026939691.2 mRNA downstream 64471 22032468 ~ 22038626 (-) False gba
XM_034304402.1 mRNA upstream 3714 22114417 ~ 22132220 (-) False LOC113542354
XM_026939825.2 mRNA upstream 3714 22114417 ~ 22124619 (-) True LOC113542354
XM_026939827.2 mRNA upstream 22729 22133432 ~ 22140874 (-) False si:ch211-149k23.9
XM_026939826.2 mRNA upstream 22729 22133432 ~ 22140874 (-) True si:ch211-149k23.9
XM_026939829.2 mRNA upstream 30300 22141003 ~ 22143447 (-) True atg12
XR_004578404.1 other downstream 827756 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2279414 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2356214 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2357157 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2399937 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 790648 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 790648 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2125589 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2280827 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2425157 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile