RNA id: XM_026939611.2


Basic Information

Item Value
RNA id XM_026939611.2
length 2808
RNA type mRNA
GC content 0.52
exon number 23
gene id mtbp
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21748221 ~ 21771707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGTGCACTTAATGTAGGGAGTAGGgcgccatttgggattcagcctagAAGAAGGATTCGGTAAAACGCGGGGAAGTTTGGTTTGTGTTGTGTGGCATGATATTAACTAAGTGGACTTATGTGAGGTGAATGAGATAGAGCTATGGACAGATATGTTCTTATTGTGGTAATTAATCAGGAAGCGAAGAAAGAGAGCTCTTTCAGCGggATTGAAGCTGCCAGAAAGGTGTATAACAAGCTAAAAGATATTTGCAGGACTGACAGCACGACACGGCTTTCTCCCCTTCCAGCTTGCTCTCTGAGTGGAACTCCTGCCTCCCCAAAATGGTTCTTCGCTTTTCAAGCAACTCATGGCCCGACACAGTTCTGTAGCTCAGAGTgggatgaggtgtgtgtgcagcacAGTGATGGTGAAGAGTCTGTGCTTTCTCCTGTGGACAGCTGTGTCTGCGCCCTGCAAGAGCAAGAGGAGCAGAGCCAGCTGTCTGAGATCACCTCACACACGGAGCTCTTTGAGGAAGCAGCTGATTCGCTTCATCAGTTAGCAGACAAACTTCCTCCTCCAgGAAGGTTCCTGTTGGATGTAATTCTGCTGTGTGAGGGTGAGGTAGGAATGAAGGACTTGCTGCCAGTGATCGGTTCCCTGAAGCATATGCGGGCTTGGCACTCTGCACAGATGACAGTCATCACAGAGCAAAGTGCAGGATGGCGAACAGCAGCCTCGTACCTGTCGGGCCGTGTGTGTTCTCCCTCTGATCTAGAGAGCTGCATCGATGCCAGTGAGCTTTGGAGAGGGGGACTGCTGATCCGAGAGAAGAAGTTTGTCTCTGAGCTGCTGTTTGAGGGGTTCAGTTTGAAGTGGCAGATCGGAGGTGGCCGGAGCCACATGTCAGACCCCTGCTGCTTTACTGACCACATGATTCAGCCTGAAGTGTTTCACTATTACCAGCCAGTGCTGGAGCTGATCCAGTTGGTCAGAGTCGCAGATCTCCCAGTGATTCTTCTTTCTGCCACTGAGTTTGAGCTTGCATTGTCCAGCAAATCCGCCAAAGCCAAACTTCTGTTAGAACAGCTCAGAGCTCTACGGGGAGAGGTTGGAGCTctgttctctctttcctgtGTGGTGAGCGTTGAAGCCTTTCCTCCAGCCTCCCAGCTCAGTGCCTCCAAATGGAGGGATTTTGTGGCCAAGCGCCCAAAAGCTTTCTCTGCTCCTGATGTCAGGGTGAAAGGAGAGAAAGGCCACTATCTTCTCTTGGTTCAGGGGGCAGAGACTGGTGGCTGCAAAGCACGATTAATACACTCCTCCAATCAGATTAATGGTGCTGTTGCTCTGGCAACAATCAACAGCCTTGTACAGGAAAAAGTTTCATTATCCTCAGGCACCGAGATTGCTGATTGGCTGCAATCTCTGCCCCGTCTCTGTGGAGACGACCTCTTGCGGAGGGAGAGGAGGCTGGCCAGGGTCCAGCACCGGGTCGTCCAGGAATGTGCCCGAAGAAGAGAGGAGGCACAGAAGCCCGCAGCTGTGCCACTAAATGACCTGAGAGTACTGCTGCGTCTGGCCAGAGAGCAGTACCTAAAGATGCAAAATGCCATGCAGCCCAGAGTATCATGTGTGCCAGTAGAGAAGGAGAACCACACTTCTGTTACAGGAGCAGACAATAAGCACACCGCCCACTCAGAATTGCCAGAGAGAAGTGTTCTGAGGAACTATGAAAACGCGCAGAAGATCCGGCACAAAAACAGGTCTAGCCTGTTCAGCAGTGGCTCTTCAGACTGTCTTATGGGCCCTAAAGATGGCCAGAAGAGTGTTTCTGCACCACTGGATGCACGAGAGCTGCTTAAGCACTTCACTGCTGATGGGCTACCAAGTGGAGAACTACAACCTCTCCCTGTCCTCAGACGGGATAATGCGTTCCAGTTGTCGCCTGATCTCACTCCCAGAAAAGTGACCAGACTTCCATTCAGGCAAGCAGCCAGCGCTCACTACCATGGCATAGAGTTTTGCTTGGACGAGCGGAAGGCTCTGGAGAGAGACTGTGGATTTGCACGCTTGCAGTCACGGCTAATCCGCTTCGAGACCCAGACTACGTGCTGTAAGGAGCCGTGCCCGGTGCCGCTGGCTCTGAGCCCTATGCCCGCACCTACTCCCTCGCCCTCTGAACCTGGCAGCGTACCGGACGGAGAAGCTGCACACAACGATCTACCTCATCTCAAACGCCGCTCCCGTGAAccagacgcgcacacacatcagcaaaaaagGTTGGTCAAGTCAGAGAGCAGTGAGTCTCTGGGCTCTCAGTGCAGTGGAGGTAGTGGTTCACACCCAGCCGTGAGAGCTCTGCAGCAGCAGTCAGGCCGTTCTCTCTCCTGCTCCAGTCAAACCAGACGCTCCACTGCTGGAGCTGAAAGTTCCAACGAGCCTCCAGCCAGCCAGAAATCTAGCCAGGGCCAAACTGAGTCACGTTCACAGAAACACAATCGGATGCTGAAGGAGGTGGTTGCAAAGACACTGAAGCACTATGGCATCACCAGCGAGCACAAGTGCTTCAAGGCCTGCAGTCAAAGACTGTTTGATGTATCAAAGCTCTATCTGAAGGACCTGAAAACGTCACGGGGTCTCCATGAGGAAATGAGAAAAGCAGCTGGTCGAAATGCTAAGCAGGTGATCGACTGGGTTGTGGAGAAAGCCAAAAAATGATGTGTACGTCAGAGGTGTGTACACACCACGTGTTTACCTGTTTTGCATTATGTAGTGTCTGTatgatgtgttagtgtgtattaaagtgtgttttattttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14218 lncRNA downstream 213022 21493358 ~ 21535199 (-) False G11974
TU14217 lncRNA downstream 213022 21534410 ~ 21535199 (-) True G11974
TU14196 lncRNA downstream 224506 21475423 ~ 21523715 (-) True G11961
TU14201 lncRNA downstream 224506 21512459 ~ 21523715 (-) False G11961
TU14216 lncRNA downstream 255012 21487710 ~ 21493209 (-) True G11973
TU14681 lncRNA upstream 85908 21857615 ~ 21858840 (-) True G12373
TU14683 lncRNA upstream 100569 21872276 ~ 21960299 (-) True G12375
TU14687 lncRNA upstream 155752 21927459 ~ 21930143 (-) True G12377
XR_003404323.2 lncRNA upstream 162976 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA upstream 162976 21934683 ~ 21937784 (-) False LOC113542638
XM_026940137.2 mRNA downstream 233866 21509640 ~ 21514355 (-) True mrps2
XM_026940092.2 mRNA downstream 268988 21455371 ~ 21479233 (-) True setd2
XM_026939965.2 mRNA downstream 375527 21361624 ~ 21372694 (-) True ccdc12
XM_026939890.2 mRNA downstream 472880 21263577 ~ 21275341 (-) False rxrbb
XM_026939729.2 mRNA upstream 20304 21792011 ~ 21882210 (-) True col14a1a
XM_026939584.2 mRNA upstream 121440 21893147 ~ 21925684 (-) True deptor
XM_026939809.2 mRNA upstream 236528 22008235 ~ 22019237 (-) False polr3c
XM_026939808.2 mRNA upstream 236528 22008235 ~ 22019237 (-) True polr3c
XM_026939691.2 mRNA upstream 260761 22032468 ~ 22038626 (-) False gba
XR_004578404.1 other downstream 472880 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 1924538 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2001338 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2002281 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2045061 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 1129644 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 1129644 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2464585 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2619823 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2764153 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile