RNA id: XM_026939623.2


Basic Information

Item Value
RNA id XM_026939623.2
length 1450
RNA type mRNA
GC content 0.44
exon number 5
gene id josd2
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22234336 ~ 22242635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcatcatcatcatcaacaacaacaacaacaacactgctGCTTCCGGTTCACCATTTCGCGGAAGTCATTACAGCATCCAAGTTACAGGGAGATAGTAGAGTTGTTCATTTAGCTAGATGTGTTCTTATTTATCGATGAGTTGGGTGGAAGAGTTTACATCTGATTTACGgctagtttgtgtttatgcTTAGTGTACTTTGTGATTAAAGagccccTCTCCAGCTGGatttcaggagtgtgtgagtgtgtgtgtgtgtgtgagtatgagcGGGGTGGAGGTGTTTCATGAGAAGCAGAGGTTGGAGCTGTGTGCTATTCACGCCCTGAACAACGTGCTGCAGGAGAGAGTGTTTACCAAGGAGGCTGCTGACGACATCTGCAAGCGCCTTGCCCCACAGTGTGTGGTGAACCCACACCGCTCTGTGCTGGGTACGGGGAACTATGACGTGAACGTGATTATGGCGGCTCTCCAGAGTCGTGAATTGGCTGCAGTGTGGTGGGACAAACGTAGGTCAGTGCAGAATTTGCGTCTGGAGAAGGTGCAaggttttattttgaatgtCCCGTCGCGGGTGTCGCTGGGAATCGTGTCCCTCCCACTGAGACGTCGGCACTGGCTAGCAGTTCGGCAGGTCAATGGGCAGTACTACAACCTGGACTCTAAGCTTAAGGGTCCTGTTTGGATCGGAGGAGAAACAGAACTCAGGCCATTTCTCAGTGAGCAGTTGTCTCAGGATGTTGCCGAGATGCTTCTTGTAGTCCAAAGAGAAGTGGAGGAGGATGGATCATGGCTTATTTCGGATGGCTGTGAGAACTGAAATCTCAGGACAGGAAGCTCACTCAGGCTGTTCATGCACAAtgcaaaaaggtttttttttttttttttaaaaaaggacgGTCCTGTGCAGCGCAGCACTACCAAAGAGGAAGGACGCACTCCCAGATggtcacacttacacacagagaAGTCTAATTGAAAGGTTAATGTAAGGGACATCATCTCTGCTGTAAAggaggtgttttatttttatttttatttttttaaacaaaggatTCGGGCATGATAGCAGTATGTGGCACAGACTGCTACAGCTGCATCACCtgcctctcttctttctcccCCACTTTTCATTTCTCTCAGGATAAGTGCttgagttttaaaaataacatttgagCAGTGTTATTTGTTCTGCATCTATGCAGTGCACTGCTGAGGTTGATGAAGGTGTGTAGCCAACTATGCACAGAAATGCTACAGCACAGtctttgtaaatataattaaagttGTGAGATGTTTCTGTTCATCCAGCTCTGCATATTTTGGGAAACTTTTTCTCCTGActcttctttttatttgcttatgtttcttttctcagtttGTTCACATCTCAGAGGATACAAGTGGAATTAAATATTCACTAATAAATtgactgttatttaaaaaaggaa

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14683 lncRNA downstream 274037 21872276 ~ 21960299 (-) True G12375
XR_003404323.2 lncRNA downstream 296551 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA downstream 296552 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA downstream 296553 21934683 ~ 21937783 (-) False LOC113542638
TU14687 lncRNA downstream 304193 21927459 ~ 21930143 (-) True G12377
TU14840 lncRNA upstream 92490 22333125 ~ 22334604 (-) True G12498
TU14995 lncRNA upstream 447585 22688220 ~ 22689214 (-) False aicda
TU14997 lncRNA upstream 449341 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 450336 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 450653 22691288 ~ 22691526 (-) True G12642
XM_026939733.2 mRNA downstream 41134 22182156 ~ 22193202 (-) True flcn
XM_026939990.2 mRNA downstream 53843 22169927 ~ 22180493 (-) False zgc:174888
XM_026939989.2 mRNA downstream 53850 22169927 ~ 22180486 (-) True zgc:174888
XM_026940228.2 mRNA downstream 73043 22155538 ~ 22161293 (-) True grwd1
XM_026939829.2 mRNA downstream 90889 22141003 ~ 22143447 (-) True atg12
XM_026940028.2 mRNA upstream 119250 22359885 ~ 22370126 (-) True pitpnc1b
XM_026939686.2 mRNA upstream 341460 22582095 ~ 22589716 (-) False cacng6b
XM_034304233.1 mRNA upstream 341460 22582095 ~ 22589036 (-) True cacng6b
XM_026940014.2 mRNA upstream 353913 22594548 ~ 22602541 (-) True u2af2a
XM_026939768.2 mRNA upstream 379939 22620574 ~ 22644685 (-) True epn1
XR_004578404.1 other downstream 958995 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2410653 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2487453 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2488396 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2531176 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 660716 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 660716 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1995657 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2150895 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2295225 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile