RNA id: XM_026939686.2


Basic Information

Item Value
RNA id XM_026939686.2
length 1761
RNA type mRNA
GC content 0.42
exon number 5
gene id cacng6b
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22582095 ~ 22589716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCTGTGGAGCCTCATGTACGTGATCCTCAGAGCTACACCCAGCCAGGCTACAGgCTCTTCACAGAGGACTGTTCATCTGGTGACTACTGATCTCCTTCTTGTATTTACTCCTGTCTCATCCTTCCTATAGTTAGTTTATTTTATCTTCTCTGACTTTACTGCACTGCTTGCCTCTCTACTTTTGGTTTTTATTCAATTTCATCCCtcattcctttttccttttattagTTTTCATTCTGGTTCTTTATACCAGTCTCTCATCAAGAAGAGgctaattttatttgaatatctAACTGATTcacttaatttattattattattttttatattgacCTCTATATCCCTTTGTTTTTTATGATTTAAGGGATTTGTTTCATCCTATTATTTTTACAGCCTTCAACTCTGTTATACCCAACACTTTTAAAACCTGCAGGTACAATGTGGTCTAACTTTTTCATGCAGCAGGAAGAGGATGCTCGAATGGGTGGGCATGTGGGAACTGGGGCCGGGGCTGGGGGAGGGGGTGGGCGCAGTAAAAACAGAGCCAGGTCCTCACACATGAGTGAAAGTCAAGAGGGCAAGATCAAGATGGCATTTTTTGTGGCTATCGTGGGTGTGACTCTGACCGTGCTGGGCCTGGGCACAGAGTTCTGGGTAGAACTGGCACAGCCCAAACACTTCCAAAATAGCCAGTCATGTCAGATGGTGCACTACGGCCTGTGGAAGGCCTGCACCCGCACACTCTGGGTGTCTGACATTGAcccggagagagagagctgcggCCCTGCAGAGCTGCCTGGAGaatcTAACTGCACATACTTTAAGTTCTACACTTCGGGAGAAAATGCAgtcatttttaagaaaacaacAGATAAAAATTTAAGTCTGGCATCAGCGATGCTGGCACTGTTCAGTTTGTTTCTAATGGTGATGGGCTCCGTGTGTATTATCATGTCTCTCACGAAGAATGTACCCTTCCTCCTCAAGCCTGCTTCTGTCTGCTTCCTCATCTCAGGGATCCTGATCCTGCTGTCCATCATAGTTTTCCACCAATCGGTACTGGCATTGCTGGCGAGTGATCACAGTGTCCCTCTGCATTATGAGCTGTCCTGGTCAGTGGCGTGTGTAGGCTCGGCCGGGGCCATCCTTCTTGTTGGCGGCATTCTCTtcctgttgctttctttacccTTCAATCCTTTCAAGAAATGCATAATGCACCAGAACAGCAGTGCCTAGCAGACTGgaccattttttttacttatagaTATTAATAAGCTGACAGAATTAAAGACTGACAGGTTACAAAGACTCGCAATGGTACATAAAATTTTCTGGCAATTGATTGACCCAGAATTAGATTTTGAAACTGCTGAATTAAGCACTGAGTGGCCACTTTATTGGTTAAGATATATGATATAGTAGAATAGAGCTTGGgttgtttgatttttattagATAATAGACACCAATCAGTTATTACTGTAAAGGGATATATTCATGTAAAGCTGCATTCATGATGCCCAGGAACTCCACTCTGAACTTTCTTCTTCCCTCTTCTTACCTCAAAAtcttcacacacttcagctgtgtaaagttgaagaaaaaaaaaagtcatttgttGTTTGATTTCTGTGGGGATATAAGAAGTGCTGAAATAGCTTGGTCCTATAAAAGTGGAAGTGTGATGTATACTATGGTGGTTCACCACTGAtagaaggaaaagaaacatgAGTGCgcagtttgattaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14840 lncRNA downstream 247491 22333125 ~ 22334604 (-) True G12498
XR_003404323.2 lncRNA downstream 644310 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA downstream 644311 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA downstream 644312 21934683 ~ 21937783 (-) False LOC113542638
TU14687 lncRNA downstream 651952 21927459 ~ 21930143 (-) True G12377
TU14995 lncRNA upstream 98504 22688220 ~ 22689214 (-) False aicda
TU14997 lncRNA upstream 100260 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 101255 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 101572 22691288 ~ 22691526 (-) True G12642
TU15016 lncRNA upstream 159897 22749613 ~ 22753941 (-) False G12656
XM_026940028.2 mRNA downstream 211969 22359885 ~ 22370126 (-) True pitpnc1b
XM_034305933.1 mRNA downstream 339460 22234336 ~ 22242635 (-) False josd2
XM_026939623.2 mRNA downstream 341460 22234336 ~ 22240635 (-) True josd2
XM_026939733.2 mRNA downstream 388893 22182156 ~ 22193202 (-) True flcn
XM_026939990.2 mRNA downstream 401602 22169927 ~ 22180493 (-) False zgc:174888
XM_026940014.2 mRNA upstream 4832 22594548 ~ 22602541 (-) True u2af2a
XM_026939768.2 mRNA upstream 30858 22620574 ~ 22644685 (-) True epn1
XM_026939769.2 mRNA upstream 30858 22620574 ~ 22644684 (-) False epn1
XM_026939966.2 mRNA upstream 84061 22673777 ~ 22686284 (-) True necap1
XM_034304263.1 mRNA upstream 96691 22686407 ~ 22691804 (-) False aicda
XR_004578404.1 other downstream 1306754 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2758412 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2835212 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2836155 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2878935 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 311635 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 311635 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1646576 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1801814 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1946144 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile