RNA id: XM_026939729.2


Basic Information

Item Value
RNA id XM_026939729.2
length 7023
RNA type mRNA
GC content 0.50
exon number 49
gene id col14a1a
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21792011 ~ 21882210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgactattgcaGCTTTAAGCTAGAAGAACAGCATCATGTCAGATCTAGAAGAAAGACTTAGGGTTTAAGTATTTAATCCACAGGCGACATTATGAGGCAGGACACGCCTCGCTTTGTGGAGGAGACTGACTGTAGCTGAATACATACGAATATTAAGTCAATATCAGCAAAATACGCTAAAACTGCATAACACAAGCTATAAAATTGGACGGTAATGAACATGTTTGAGGATGTCTGAGGTTCGCCATAGCGCTCTCAGGTTTTGAGGCTCCCACCTTTTTTACCTCTCGCGCTCTAATTGGTCGCGCGCTGTTGTTTCTCCGCCGAGCTCGAGGATGAAGCGAGCTGAGGAGCTGAGGAGGAGGCATGAATAAGTAAGGaccagccaaacacacacacacacacacacacacacagtcacagtcaTAGTCACACCACGAAGCTGGCTTTCGGAGCTAACTCTGGGCACAGAGAGGaaagaaggaataaaagacagagCGTTTAAACCTCTGGGTTATTTACCTCAGGAGCACATCTGGATCAGAACGGATTTGTTTTCCTTCAGCTGAATGGTGTGGCAGGTACAGAAGAGGCTCACTGGCTTGATCGTCTGAAGGAATGCAGGTAGTCAGGTTGAGAATGACCGCGTTGTGGCCGCTAATCTTCCTGGCACTGATGCAGTTTGCAGATCCTACAAAAGGGCAAATTGCAGGCCCACGAAGACTGCGATTTAAAGTCATGGGTCCTGACAAGTTGTATGTGTTATGGAAAGAGCCAAAGGGAGAATACGATGGCTATAGATTTATTTACAACAGTGTGCCGGatggagagaggaatGAGCTTCGAATTGGAAAGGGTCAAACCAAGGCAATAATAAATGACTTCAATCCCACAAAGGAGTACAAAGTCAAGGTTATAGCTGTGAGTGGAAGTCAACAAAGCAGAGCACTTGAAGGAAGCTTTGGAGCTCAGGGCCGGGAatttgagagagaaaacaccCAACCACCGAGAATAAAGGAGATGCCTACAGAGGATGGTATTGAACTATCAGGAGTGGATCAGTTTGTGTGCACCACATCTGCGATCGCTGATATTGTCATCCTGGTAGATGGCTCGTGGAGTATCGGCAGGCTCAATTTCCGTCTGGTGCGCACATTCCTGGAAAACCTGGTTAATGCTTTCGATGTGGAAATTGATAAAACCCGTATAGGACTGGCCCAGTACAGTGGAGATCCCAGGATTGAGTGGCACCTCAATACCTTTACCACTAAAGATTCTGTCATTGATGCTGTCAAAAACCTGCCATACAAAGGAGGAAACACACTCACAGGTTTGGCCCTTACATACATTCTGAAGAACAGCTTCAAACCAGAATCTGGTTCTCGAAGCAACGTTCCTAAAATCGGGATCCTGATCACCGATGGTAAATCTCAGGATGCTGTTGACAGTCCTGCCCAGAGCTTGAAGGATGCCGGTGTTGAGCTCTTTGCCATTGgGGTAAAGAACGCAGATGAAAATGAGCTGAAGGTCATTGCCTCTGAGCCACACGATACACACACCTACAACGTGGCCGACTTCAGCATCATGAATACTATAGTGGAGGGTCTGACCAGGACTGTGTGCGAAGGTGTAGAGCAACAAGACAAAGAGATCAGAAGAGATTCAGTCCCTGAAGACACACTAAACTCTCCTCAGGACTTGGTGACGTCTGAAGTGACAGCGCGAAGTTTCCGTGTGTCCTGGACCCATGCACCAGGCAGTGTTCAGAAGTACCGTGTGATTTACTATCCCAGCAAAGGAGGTCAGCCAGAAGAAGTTGTGGTGGAAGGCACAGAGACCTCAGCCGTGCTGAAAGACCTCAGCTCCCTGACTGAGTATGAGATTGCTGTGTTTGCTGTGTACGCAGCCTCAGCCAGTGAGGCTCTCAGGGGCAGTGAAACCACACtggCTCTGCCTGTGGTCAGTGGTCTGGAGCTGTATGATGTTACTCAACACACCATGCGTGCTCGATGGAGGCCTACAGAAGGGGCTACTGGGTACATGCTTGTGTATGCACCCCTAATCAGTGAAACTATTGATGAGACTGAGGTCAAAGTAGCAGACACCGTGACAGACTTTGGGCTGGTGGGTTTAAGTCCGGATACAGAATACACAGTGACAGTCTATGCCATGTTCGGAGATGAGGCCAGCGATCCTGCTACTATGCAGGAGACCACCTTGCCTCTGAAGGCTCCTCGTAATCTTCGTGTCACTGAGGTGGACCACAACTCGGTGCGGCTCAACTGGGATGCACCGTCAAGCACAGTCAAAGGCTATCGGCTGAAGTACGTCAAAAGTAACGGTGCACAAACTAATGAGGTTGATACGGGTCCAGTTTCTAATGTATATCTACGGAACCTGGCCTCCCAAACAGAGTACACAGTGTCTGTGTTTGCAGTGTATGATGGGGATCAGTCAGAACCCCTGAAGGGCGTTTTCACCACAAAACTCGTTCCAGCTCCACGGTCCATTAAGATTGATGAGGTGACACCAAATAGTTTCCGGGTGAGCTGGACACAACCAGGGGACGGAGTGGAGCTTTATAAACTCGCCTGGAGATCCTTAGGAGGAGGAGACACTAAAGAGGTGGTTGTACCAGGCAACATAAATACCTATGTGGTGAATGATCTTTCTCCTCTTACTGAGTATGAAGTGCTGTTGTCTGCTGTCTATAGAGATGAGGCTGAGAGCAGTGCTGTACCTGCTTTAGAGACCACATtGCCCATGCCTGCTACCACAGCCTTCCCCTCTACAACCCCACCAGTCATGCGGCTGGGAGTGACGAATGTGCTGGTGGACGATGAGACCACGAACAGTCTGCAGGTCAGCTGGGACATTGATGATGCAGATGTTGAGCAGTACAGAGTGACCTACGTCAGCCAGAGAGGAGACCGTGCAGAAGAGtcgGTGCTGGTCCGAGGTAGTAGAAAGAGTGTGATATTGCAGCCTCTCCTCTCAGACACAGAATACAAGATCACAGTTAACCCTATTTATCCGGAGGGAGAAGATAGCGCATTCTCTCAGTCCTCCGTTGGCCGTACATTACCACTGACTGCACCCAGCAACCTGAGGGTGTCTGAGGAATGGTACAACCGCTTCCGCCTCACCTGGGACACACCTGCCTCACCCACCATGGGCTACAGGATCATCTACCAGCCTACTTCTGtGTCGGGTCCTGCTCTGGAGACGTTCGTAGGAGAAGATGTGAACACACTGCTGATCCTCAACCTGCTGACTGGCACTGAATACAGCGTTAAGGTCATTTCTTCATACACAACAGGCTCCAGTGAGCCTCTCACCGGCACAGCCAAGACACtgtttcTGGGAGTCAGCGGGCTCAGTACATACCAGGTGCAGATGAACAGCATGTGTGCACAATGGCAGCCTGTCAGCCAGGCCTCCCTCTACAGGGTCACCATCGAGTCCCTGCTcaATGGTCACAGACAGGAGCACAGTTTAAGTGGTGGTGCCTCCAGGCAGTGTTTCTTCAACCTGTCGCCTAACACGCAGTACAAGATCAGCGTCTACACACAGCTACAGAACATGGAGGGCCCTGCCGTCACCATCATGGACACCACATTTCCAGCTCCAACCCAGCCACCAACTCCACCTCCCACCACTGCACCGATTCCCACCATCCCATCAGCTAAAGAAGTTTGTAAAGCAGCCAAAGCAGAGTTGGTGTTCTTGGTGGACGGCTCCTGGAGCATAGGAGATGACAATTTTCAGAAGATCATCCGCTTCCTATACAGCACCACTGGCGCTTTGGATATCATTGGTCGTGAAGGAACACAGGTGGCCATCGTTCAGTTCAGTGATGATGCCAGGACAGAGTTCAAGCTCAGCTCCTACAGGGACAAGGAGTCTCTGCTGGATGCTGTACAGCGCATCACCTATAAGGGAGGAAACACCAAAACAGGTCGAGCCATTAAGCACGTGAAGGAGAGCATCTTTACAGAAGAGGCTGGTGTGAGGAGGGGAATTCCCAAAGTCCTGGTGGTGCTCACAGATGGCCGGTCACAGGACGACGTTAACAAGATCTCCAAAGACCTGCAGACAGAGGGTTACATCATCTTTGCCATTGGCTTTGCTGATGCGGATTACGGGGAGCTGGTGAACATTGCAAGCAAGCCCAGTGAGAAACACGTCTTCTTTGTAGACGATCTGGATGCAGTCAGTAAAATCGAGGAGCAGCTCATAACATTtgtgtgtgaggcagcaacaGCCACTTGTCCATCTTTGCTGATGAGTGGGAATACTTTGGcagGTTTCCGTATGATGGAGATGTTTGGGCTGGTGGAGAAGGACTACAGTAATGTGCAGGGTGTTTCCATGGAGCCTGGAACTTTCAACAGCTTCCCCTGCTACAGACTGCACAAGGATGCTCTCATTTCACAGCCGACCAAATATCTGCACCCTGAGGGACTCCCTTCTGACTATACCGTGTCAGTACTGTTCCGCATCCTACCAGAAACTCCTCAGGAGGCCTTTGCATTGTGGGAAATTCTCAATAAAGCCAATGAACCCTTGGTGGGTCTCATCCTGGACAaTGGTGGGAAAACATTGACATTCTTTAACTATGACTACAAGGGTGATTTCCAGACAGTGACCTTTGAAGGACCTGACATCAGAAAAATCTTTTACGGCAGTTTTCACAAGCTTCATGTGGCAATCAGCAAGACCTCTGCGAAGATAGTCATTGACTGTAAGATAGTGGATGAGAAGCCCATCAGCGCTGCTGGGAACATCACCACAGATGGAATGGAGGTTCTGGGCCGAATGGTGCGCTCGCGGGGCAGCAGGGACAACTCAGCATCGTTTCAGCTTCAAATGTTTGATATTGTCTGTAGTACATCATGGGCCAGTCGAGATAAATGCTGTGAGCTCCCAGGCCTGagaGTAGAGCAAGACTGTCCTGCTCTGCCTCATGCATGCACCTGCTCTCAGGACAGTAAAGGACCACCAGGACCCTCTGGACCTCCAGGTGGTCCTGGTATAAGAGGCTCAAGAGGTGACCGAGGGGAACCAGGCTCAGTGGGACCTCAAGGGCCAACCGGTGAAATTGGACCTCCAGGACCTCAGGGGCCTCCTGGACCACAGGGGCCAAGTGGGCTCTCTATCCAGGGATCACCAGGATCTGcaggagaaaaaggagaaaaaggtgACCAAGGTCTGCCAGGTCCTCAGggtGTGCCAGGAGCCAGTGGAGGTCCTGGCAGAGACGGCCTACCGGGACAGAGGGGTTTGCCTGGGAAAGATGGACCACAGGGACAGCAGGGCCCACCAGGACCTATTGGAAGTCCAGGTGCTCCCGGAGCACCAGGAACCACTGGACCTCCAGGACCACATGGTGATCACGGGCCACCTGGCTCTCCTGGTACCAAAGGCGAGCGAGGGGAGAGGGGTGACATGCAGTCTCAGGCAGTTGTCCGCTCTATAGCCCGACAAGTGTGTGAACAACTAATTCAGAGCCACTTGTCTCGCTACAACTCAATCCTGAATCAGATCCCCAGTCAGTCTGTGTCAGTCCGGACAGTGCCAGGTCCTCCAGGGGAACCAGGCCGTCAGGGCCCTCCGGCACAGGGAGAGCAGGGACCTCCAGGTAGACCAGGCTTCCCCGGAGGTAATGGACTGAGTGGCCGTCCAGGAGAGAGAGGGTTCCcaggagagaaaggagagaaaggcaCTCCAGGTGTGGGGACACAGGGACCCCGTGGCCTCCCAGGACCCCCAGGTCCTCCAGGTGAGGGCCGGACAGGAAGCCAGGGTCCTCCAGGCAGGCCTGGACCTCAGGGCACTCCGGGTCGCACTGGAAGTCCTGGCATCTCTGGTCCTGCTGGACCACCAGGCTACTGTGACCAGAATGCCTGCTTAGGGTACAACATAGGAGTACAACAGTTACCTCCCAGTTCCTACCAAAACTACGGGCCCACTGACACTAATGAtgaagagggagaggaggaagaggacccGTACGGCGGATACCGCCACTACCCACCCCAGTACTACCAGCCCAGCTATCCCAACCCTCGTGTTGCCCAGCCTGGCACTGCTTATCCCGGTGCCATGATGAGGGAGCGAGGCACGCACCGCTTCTCCCGCAGCATGACTGAGAGGAGTGGCACTCAGGCCACAACACAGGAAGAGGATAAATCTGCACACTGACAGCCCcatccagaaacacacacttagtATTAATCAAGTGTCCAGTAGGATAGCATTAACTGAATGGTATTTGGAAAGTGCCTGATGGGGGTGGGTGCTATGGAGGGAGTGGTGCCCACAGACCTTCAatgacctttttttgtttgtttatttaaaaatgcatgcagTCATTTAAAACCACAAAAAGCTCTCAAACAATGCAGTGGATTTGTATTAGTTGTccatttgggggaaaaacattgaatttgtacagtttgtgtaattgtttttataataaaaatggaGATTGAATTTCAGTGCTTCCATGTTTGATCATCCACGCTTTCAATGTTCCTGTCACgtttctgtgatttatttatagaaagatGAATCCTTGGCAGTACCggacaatttaaaaaacacattgaaCCAAATCTAACATTGCCACAGATACTTATAAATGCCACACATGTCTGGAATGTGATTGTACATTGACATGTCAATGTGAATTTCCTGTGGATTTGGTCTTATAAGGATAAATGTTATGCAGTTATTGGGGATTCAGTAAGGGctcttgaactttttttttttttgatttaatACAAGAGCTCAGACTGGAagtccttttctgtctctctctgtgtatgtgctTGTCCTATGGGCCTATTCACTGTGGAAGAGTGTTGAATAGTTAGGCCTGTGGTCTACTGTCCTCTCAGAACGAATCAAACTGTGTGTGCTGAACAGGTGCCAGAGGAATGGCTCACTACCAAATTTTTGAAGCGGAAAAGTAacttatttttactttgttttgtaaccaataaaactgtaatatgaTA

Function

GO: NA

KEGG:

id description
K08133 COL14A; collagen type XIV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14218 lncRNA downstream 256812 21493358 ~ 21535199 (-) False G11974
TU14217 lncRNA downstream 256812 21534410 ~ 21535199 (-) True G11974
TU14201 lncRNA downstream 268296 21512459 ~ 21523715 (-) False G11961
TU14216 lncRNA downstream 298802 21487710 ~ 21493209 (-) True G11973
TU14210 lncRNA downstream 308312 21480619 ~ 21483699 (-) True G11970
TU14687 lncRNA upstream 45249 21927459 ~ 21930143 (-) True G12377
XR_003404323.2 lncRNA upstream 52473 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA upstream 52473 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA upstream 52473 21934683 ~ 21937783 (-) False LOC113542638
TU14840 lncRNA upstream 450915 22333125 ~ 22334604 (-) True G12498
XM_026939611.2 mRNA downstream 20304 21748221 ~ 21771707 (-) True mtbp
XM_026940137.2 mRNA downstream 277656 21509640 ~ 21514355 (-) True mrps2
XM_026940092.2 mRNA downstream 312778 21455371 ~ 21479233 (-) True setd2
XM_026939965.2 mRNA downstream 419317 21361624 ~ 21372694 (-) True ccdc12
XM_026939891.2 mRNA downstream 516964 21263577 ~ 21275047 (-) True rxrbb
XM_026939584.2 mRNA upstream 10937 21893147 ~ 21925684 (-) True deptor
XM_026939809.2 mRNA upstream 126025 22008235 ~ 22019237 (-) False polr3c
XM_026939808.2 mRNA upstream 126025 22008235 ~ 22019237 (-) True polr3c
XM_026939691.2 mRNA upstream 150258 22032468 ~ 22038626 (-) False gba
XM_026939690.2 mRNA upstream 150258 22032468 ~ 22038626 (-) True gba
XR_004578404.1 other downstream 516670 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 1968328 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2045128 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2046071 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2088851 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 1019141 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 1019141 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2354082 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2509320 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2653650 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile