RNA id: XM_034304402.1


Basic Information

Item Value
RNA id XM_034304402.1
length 4080
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC113542354
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22114417 ~ 22132220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGAAGAAATGACAGGACCTAAACCAGAGTGGAAAAACCGCCTGACGCATGTCTGGTAAACCAAAAGAACTTCTAGAAGGAGCTGAAAGAAGAGAGGCAGCAGTTTTTACAGTAGCCCTGGTCATTTTACTCTGTTGGACTAGTATCAGAGAGTACTGGAAATTTCCCTGATGTCTAATTCTCTGATGTTCAGCTAATAACAACCTGATGCAAGTGTGCTTGAACAAGTGTTAATAACACTGCTGTTACTGGTCAAAGAACAGAAAAGCTGGTCAGCTGGGACATACTCATCTAAGACAAGTTTGTGACACTCATTGTGAGTCACATTCACCATGGAACCAGTCCTTGATCTCTCCTCCCTCCCACACCAGACCCCCACAGTGACATATGACCCTAAGTCTGAAACTGTGACTTTCCCGAGTGGGGTGGTCTCTGTTGCAGGCGTCACTGTGATAACTGGGGGCACTGAGCTGTCCTGCGGCTCCTGTATGTTGGCCTTTGGGTTTTGGGGCACTTTGGTTGGCCTGAGTGCACTGTGTGTGGGACTGAGGGAGTACTCACTGCTAAACGAGGGCAGTATTTCAAACCTGATGGCTCTGGGTTTGGTGGTCCTAATTATAAGTCTAGGTATTATGGTTGGAGTGTGTGGGTTTCATTTAATCAGGAAGAAGGCAGGAATaatgagaagagagagggaagaaggAAAAGTTGTGCTGGTCTGTGAGGAAGGGCAGAGTGTCGTAAAAACAATGACTGTCTGAAAGGAGAGAAAGCAAAagatgcatgtgtgtttcagcAGACTGATCTCATGTTTCAGTTGCACAATAGATTTATATAGTGCTAACATCTGTGTATTGATATTTTGACATGGCAATAATCCTAATTCAAGACTGCTGAAAACTTCAGATTCAGAGGtttgatatatttattatcagAATGCCCTATATTCATGCTATGACTATTAGATACTGATACAACTGATATTCTGATATTCTTACAGGCTACTTCATCAATCATTTTACCTACTTAATACTACTtctttgtaaatgaaaaaaataaggaatTAAGGATATTTAAGTTTTTACCATaatgattctctctctctctctctctctctctctctctctctctctctctttctctctctctccctctgcacACTAACAGAGAAATTAACACAGGAAATAATTATCTGAATTTCCTGCAAGCAGAGTGGACACATATAAGGATTTCCTGTGTAAACAGTTCTGTCTGAATTCTGACATTAGCTGAgattataaacaataatttcTGTAGAAATACAAATgaatgttggtttttttttaagagaaatatgaaaatagGTCCtccaaaacaatttattttttcttttaatagttAGAACCCTGCTGTATATCCTGTAATCACTATGATATTATTTTAGTAGAAAACCCTGACTATTATGTGAATGCATAAACTGTTGCTTAAGCTTTGTCAGGCTtaagaatttaataaaatatttgtctCCATCTGCTCAGCATTCTTTATGATACTTCACATTTCACCAGCTTATCCAAGTGCTTTTTCCACTTTAAcagagtaataaaatatttccgTTGTTATTCAAgtgaatgatttttgttttaaatgaaggtACCTTAGGTATTTCATGTTAGTCCTGGATAGTCCTGGATTTCTCAGGTTTAATCCTAAACTCAGGCTGTGTaatgtttctgtgcatgttctccccatgtccacatGATTTTCATttaggttctccggtttcctcccacctcccaaagaTGGACTTAATTCCCCCTACTGTAcgtttaactgtgtgtgtggcatcccatccagggcgTATTATCAGGGTAGGCTCTGGTTACACTGCTATCCTGTTGAGCATAATGTGGTTactatgaatgaatgattgaatattattgttttattttactggacTATTTTGCAAAAATACATCGGCATAAGCTCGGTCCGTCTATccaggagagaaaataaagctgTGTCCTAATCAGGAAAGGGTACCTACACAATCAAATATGTTGGAAACAGATATGAGAGCAGCCCTAATCCAAAGGGCACTTCAGCATAAGGAAGTAGACAGTGTCATTACGCAGTCCCAGTGCTGTATAGATCTCAGTGCATTATAGTGCAAATGTGAAACCAGACTACAAAACAAGCCAGAAATCATGGAGAAAGCAATGGTGGTTACTCTGATCATAACTCTGCTAACAGGGTTCAGTCAAGAGCAGAATATATTACCACCAGGACCAATCAATAAGGAAGTAGGAGCAAATGTGCTTTTTACCATAATCTCTTCCCCTGAACCAGTACATGCTATCAGATGGCACTTCAATGGCAGTGAAGTGATCAGGTATATCCCTCCAGGACCTGAGATAGTGAACTCCGACTACCGTGGTAGAGTCTTTCTGAACTATAGTTCAGGAGACCTGGAGCTAAAAGGCCTGAGCATGAATGACTCTGGACAGTACACCATAATCTTAACATTTCAAAGTGGTCTAGGGGTTCAAGACCATATTTTACTGCAAGTTTTTGAGCCAGTGTTTGTTATAAGTATCACCAGCCCTGAGGGCAATCTCATTGAGTATAGCAGTGCCAACTTCACCTGTGAGGGAAATGGCACCATCAGTACTACAGTGTGGATGAAGGAATATGAGATTCTAGCTCCTAGCAGCAGCATCCAATTCTTGGATGACAacagaacaatggtgatcagtccGGTGAAGAGATCAGACAGTGGTAATTACCAATGTGCAATGAGTAACCCTGTCAGCTCTAGCAGTGCCCATTACAGCATTACTGTTAACTATGGGCCAGATGTGAGGATATTTGGTGCACAGACTTTAGAGGAAGGCTCAGATATCCTCCTCCTCTGCTCCCCTGATTCTGTGCCCCCTGCCACTATTACATGGACTGTGAAAGGCATGTCTACAAGAAGTGCAGCCCTGTATGTCACAGAAAACAGTAACCCAAGCGATAGTGGGGATTATAACTGTACGTGCTGGAACAATGTCACTGGGATCACAGCCTCTGCAGTTCAAGTTCTGACAGTGAGAGctgtgtcCTCTAGGCTCGGTCCTGGCGTAGAAACAGGTATTATACTGGGTGTTATTGCTGTCGTGCTGATTCTGGTTGTGGTCATCTATTTCCTCATAAAGCGCTCTAAAAAACCTGCTAAagctgtgagagaaacacctgtatCAAtGACAGCAGATCAACAAACCGATGTAACATCCGGTTATAACAATATGGTGGCAGAAACTCTAAAAAGATCAAAAGAACTCACAGCTGGGTTCACATATCATACGCAAAATGGAAGGTCAAGCCCGCCTCTCTATGAAAACCAAAGCCAAACAACTCCAGCCCGACGGAATCGACCACCATTGCCACAAAACAGGGAGACAAACGATTCAGAGTTGTACTGCAGTGCAATAGTAACTTCTAACAATTAGTTGCTGGCCCTCCAAGACATCAGAGTTTTATCTTTCACTGAAGATggcaaaataattaacaacCATTACAGTTGTCTTTTATCTCATGTTCCTTGTTCTGCAATTTATAGCtaacaaaaatttttaaatttaattgaataaacGATGTAGCAACATAAATAATAAGTCATATTTGtgctatatttttataatactaCACTTCTGATATTGGCAACAGTAAAGCCTATATAAAGCTTTAAgcaagatttttgtttttactttaacaAACAATTACTTCTTTTGCTTCTTATATTTAGTCTTTCCTTAGTGGATTAGAAATGCAGCCCAGGATTCTTCCCCCTGTTCTATTTCATTAAGAGAGGTTTGGTGATAGACAGAGCTGAGCCTGTAGCTTCAGTGATGTGTATCTGGTTCAGTGACCTTTGGTCGTTAAGTGAATAATAGGTGATATTGTAACCGTAAGTGGTATATCAAGACTATCTCGATAACAGCACTGATAACAGGTAATATGGATTGAGTTTACAGGAAAAAGGCAATGCTTTCCGGGCACATTGCTGTGTAATAAAACtcttacagtaaaaaaaaaaaaaaaaagtcttaatttATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14683 lncRNA downstream 154118 21872276 ~ 21960299 (-) True G12375
XR_003404323.2 lncRNA downstream 176632 21934683 ~ 21937785 (-) True LOC113542638
XR_004578213.1 lncRNA downstream 176633 21934683 ~ 21937784 (-) False LOC113542638
XR_003404324.2 lncRNA downstream 176634 21934683 ~ 21937783 (-) False LOC113542638
TU14687 lncRNA downstream 184274 21927459 ~ 21930143 (-) True G12377
TU14840 lncRNA upstream 200905 22333125 ~ 22334604 (-) True G12498
TU14995 lncRNA upstream 556000 22688220 ~ 22689214 (-) False aicda
TU14997 lncRNA upstream 557756 22689976 ~ 22690185 (-) True G12639
TU14999 lncRNA upstream 558751 22690971 ~ 22691193 (-) True G12641
TU15000 lncRNA upstream 559068 22691288 ~ 22691526 (-) True G12642
XM_026939589.2 mRNA downstream 3714 22103097 ~ 22110703 (-) True fdps
XM_026939833.2 mRNA downstream 13323 22087349 ~ 22101094 (-) False rusc1
XM_026939831.2 mRNA downstream 13323 22087349 ~ 22101094 (-) False rusc1
XM_026939830.2 mRNA downstream 13323 22087349 ~ 22101094 (-) True rusc1
XM_026939693.2 mRNA downstream 68751 22041135 ~ 22045666 (-) True dap3
XM_026939827.2 mRNA upstream 1212 22133432 ~ 22140874 (-) False si:ch211-149k23.9
XM_026939826.2 mRNA upstream 1212 22133432 ~ 22140874 (-) True si:ch211-149k23.9
XM_026939829.2 mRNA upstream 8783 22141003 ~ 22143447 (-) True atg12
XM_026940228.2 mRNA upstream 23318 22155538 ~ 22161293 (-) True grwd1
XM_026939990.2 mRNA upstream 37707 22169927 ~ 22180493 (-) False zgc:174888
XR_004578404.1 other downstream 839076 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2290734 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2367534 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2368477 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2411257 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 769131 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 769131 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2104072 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2259310 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 2403640 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile