RNA id: XM_026939890.2


Basic Information

Item Value
RNA id XM_026939890.2
length 3289
RNA type mRNA
GC content 0.44
exon number 11
gene id rxrbb
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21263577 ~ 21275341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAATGGCTGGCTGTTCGTGGCTGGCTCGCAGAGGGGAAATGCGCTCTCTGGCCACTAGGGGGCTGACTAACCAGGCACTTGCCCGGATGCAAAACATTCGCTTCATATTGCGTGtttggtaaaataaatattttacctgtaaattatttatagatCATTTAAATTCTGTAGCGGATCACCGAGCGCCCCTTATGTGGTTTTTAGCCACAAGGcaaatgcaaatgtttgcataacTTAACAGTGAAGACCAGTAGTCTCCTCTAAATTGGCCAGTTTGGCTTGCATCTATGAACTCGTTGGTGCCCACCACCTCGGCCGTCAGTAGCCCTGTTAGTTCCCTGGACTCCCCCCTCTCTGTCATCAGTTCATCCACTGGCTCTCCGGGTGTGCCAGTGACTCCTTCGGTGGGTTACGGACCCATCAGCAACCCGCAGATTAACTCCTCGATGTCTGAGCTGCACACTGTCAGCAGCTCTGACGATGTGAAGCCATCCTTTGTCCTGAAGTCTCCAGGAGGCACTGGGCCAATGCTGTCCCAAAAAAGACTCTGTGCCATCTGCGGGGATCGCTCCTCTGGGAAGCACTATGGAGTGTACAGCTGCGAGGGCTGTAAAGGCTTCTTTAAGCGCACCGTGAGGAAGGACCTGAGCTACATCTGCAGAGACAGCAAAGAGTGTCTCGTGGACAAGCGCCAGCGCAATCGTTGCCAGTACTGCCGTTACCAGAAGTGCCTAGCCATGGGCATGAAGAGAGAGGCTGTTCAGGAGGAGCGGCAGAGGAATAAGGACCGTGATGGAGATTATGACTGTAATACTGCAGCCAATGAGGAGATGCCTGTGGAGAAGATCCTGGAAGCTGAGACAGCTGTGGATCACAAGACAGAATTGCACTCTGCAAGCAGCTCTACTGGTGCTGCCATTGACCCAGTGACTAACATCTGCCAGGCAGCAGATAAACAGCTGTTTGGCCTGGTGGAGTGGGCCAAGCGCATCCCGCACTTCTCTGAGCTGCCTCTGGATGACCAGGTCATTCTGCTACGTGCAGGGTGGAATGAGCTGCTTATCGCCTCACTTTCTCACCGCTCCATCGGGGTGGAGGATGGACTTCTGCTGACTACAGGCTTGCACGTGCTCAGAGACAGGGAAAGTGCACGCAGCCCGGAGGTGGGGGCCATATTTGACAGAGTGCTCACTGAGTTGGTAAATAAAATGCGAGATATGCAGATGGACAAGACTGAGCTTGGATGTCTGCGAGCCATCATCCTCTTTAACCCAGATGCCAAAGGTCTGAGCAACACGAGTGAGGTGGAACTCCTgcgagagagagtgtatgcATCCTTAGAGGCCTACTGCAGGCAGAAATACCCTGAGCAGCAGGGGAGATTTGCTAAGCTCCTCCTCAGGCTGCCTGCATTGCGCTCCATTGGGCTCAAGTGTCTGGAGcacctttttttcttcaagCTAATCGGAGACACGCCCATTGAGACGTTCCTGATGGAGATGCTGGAGGCTCCCCACTAGCTTTGTCCTGAGGGAGGCTGGGAGATGACATCACTGTGACTGCACTTTTCAATCTCAGGGGAACTTGAGCAATTGGCCAGCCTCCAGTCCACGATACACTTGTTGCTAGGTTTGTCTTTTTTGTAAGTGCAAAACAGAGTCTAAAAACCCAAGACTTGCCATGAACTTAGAGTATGTTGGTGCTATATTTCAGTCATAAGTCTTGAATtcttgtggatttttttttttttttttttaaagattggaACCTTCAGTTCCCTTCCTAGCTTACATGGGATTACATTTTGATAAAACCATTTAAGGCTTTTAAACTTGTGGGTGTTGAGCTTTATTTGTCTATAAGTGTGCTCCTCCATCATCTCGTCAGTGTGgtttcttttattccttaagGGACTAATTTATTCAGCTCAGACCTTAAAGGACTGGCGATACGAACAACTGAAAGAACAGTTaggaaaaactgttttaaaatctATAAGCTGACATCGCTCTCCCAGTTAAGCTAGCCTGGCCAAACATGTATGCAATGAAACTTAATGCACAAAAGTCTGGAGAAAAGCTCATTATGATGTGCAATTCGcaaaataatgttagttaaatattttggaGTTGATTCCAGGGAAGCGAGGTCTTACCATGTGCTCATAGATATAGATCATGGGTGCTCGTCTGATCTTTTACATGCTTGATtcattgtactgttttttttttccttccttttttcttcttttcagtttGCAGTTTTGGtgaaaactgaagaaaaaaacaaaaaaaaactaggatACTCAGTTCACTAAATTAGCCATGCATTGCTTTATGACTGCAGTGTTCCAGGCTGAAGTCGGTAAACTGCTTGTGACATTGCTTTTTCTCTCAGTTATTCTTTTCGTAGTACACGCTTGTTTTATCACATATCACGTAACCTTGTAACTTGAGTTATGATTCCGTATGTAAACTGCACTATACCAgttcaaatatcaaatatttgaCCAAAAAGGGGTCATATTTGTGTATGCTTTGGTGCTTTAAAAAATAGCTGTTTTAATGTTACATCCCTGAAAACGCACATAGAAACTTGTAAGCAGGAAACGGTTATATTTTAACAAAGTTGAATATGAGCAATActaaatttaaaatgcaaatgtgtaTTCTCTTCTCATTTCTGAGTGGGAAAAATTGTCAAACGTCAATTTCTAGTACTGTGCAAACATTTGTTCAGGGACAGTGAAACGTGATTGCTACAAAAGAGCAGAAAtccatatacatttatattccaATGATTTTATCATTGCTTTTAGTTGATTTGTACATCTAAAATACGAAAAAAGACCTTAGTTTGCACTGTATTTCCTGTGAATCCCAGTTTTCTGACTgtctttgctctttttcttaGTGATGTGTTTCTCAGATTTCAATTAGATTTGTAATCTTGCTGGTTTTTGTAAGATCTTTGctttgctgttgtatttttgtgtcCATGCCAACAGCTTTGGGGACGAAGACCACAGAGACTTTGAAATGCAAGTTCCCTATTGGCAGAAATGTTTACTACACCTTCGGGTTGTTTTGTATGGTCCTGTACAACCACCATCTTTACTGCATTAGAcatgtttgtgtctgtcatTGCACTAAATTTGTCATACAATGATGATTGTAATGATCCTCCATCAGGTTCTCCATCGTTAGAGCTCAATTTAATGGAGCTTGATGGCACTGCAAGTGAACCATATGGACACGACCCTAAATAAAAGCTGGTGACATCAGGA

Function

GO:

id name namespace
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14013 lncRNA downstream 24301 21238035 ~ 21239276 (-) True G11806
XR_004577995.1 lncRNA downstream 383763 20870795 ~ 20879814 (-) True LOC117597063
XR_003404318.2 lncRNA downstream 396691 20865805 ~ 20866886 (-) True LOC113542610
TU13723 lncRNA downstream 418096 20845265 ~ 20845481 (-) True G11569
TU13687 lncRNA downstream 464165 20796750 ~ 20799412 (-) True G11545
TU14196 lncRNA upstream 200082 21475423 ~ 21523715 (-) True G11961
TU14210 lncRNA upstream 205278 21480619 ~ 21483699 (-) True G11970
TU14216 lncRNA upstream 212369 21487710 ~ 21493209 (-) True G11973
TU14218 lncRNA upstream 218017 21493358 ~ 21535199 (-) False G11974
TU14201 lncRNA upstream 237118 21512459 ~ 21523715 (-) False G11961
XM_026939915.2 mRNA downstream 124307 21131082 ~ 21139270 (-) True slc6a19b
XM_026939914.2 mRNA downstream 132630 21120820 ~ 21130947 (-) True LOC113542399
XM_026940097.2 mRNA downstream 145161 21112866 ~ 21118416 (-) True si:ch211-254p10.2
XM_034302877.1 mRNA downstream 158244 21056876 ~ 21105333 (-) True rapgef5b
XM_026939674.2 mRNA downstream 313969 20946197 ~ 20949608 (-) False sp8b
XM_026939965.2 mRNA upstream 86283 21361624 ~ 21372694 (-) True ccdc12
XM_026940092.2 mRNA upstream 180030 21455371 ~ 21479233 (-) True setd2
XM_026940137.2 mRNA upstream 234299 21509640 ~ 21514355 (-) True mrps2
XM_026939611.2 mRNA upstream 472880 21748221 ~ 21771707 (-) True mtbp
XM_026939729.2 mRNA upstream 516670 21792011 ~ 21882210 (-) True col14a1a
TU12869 other downstream 1439894 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 1516694 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 1517637 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 1560417 19702611 ~ 19703160 (-) True LOC117597712
trnaq-cug_8 other downstream 1563940 19699566 ~ 19699637 (-) True trnaq-cug_8
TU15196 other upstream 1626010 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 1626010 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2960951 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 3116189 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 3260519 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile