RNA id: XM_026939918.2


Basic Information

Item Value
RNA id XM_026939918.2
length 5472
RNA type mRNA
GC content 0.44
exon number 12
gene id shc1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24584953 ~ 24622217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAACAACTGAAAGGAAAGAGTACAGAAGGAGCGAGAGAACCTCAGCCTGAAGTGATTTGGAAGAGacgagaggaagaggagaaagagagagagaggatacaGCTGGAAGACAGGGGACCCAGAATCATctggagaaagaaggagagagaaggagaagtaAGAAGGAATATGTATGTCAGTGACTTGAAACAAAAAGGCGAAAGAGAAGGGAAGAGATCAGCCGAGTGAGCTTGATCGAGACTAGAATGGTGCTTTCTGTGTTCTATGTTCCTTTACACTGCATTGTAAAGTTTACAGTATTCTTTTATCACGAGGACTAATTTGTATCATTTAGTTCATAAGGATTTGATCAAGACAATTTGTATATAGCACTATTAACCAGGATATAGTCTTTAAACCACTGAGAAGTTACATACTTGGatctgtttaattctttaatCAGGATCTTCTCAACCTTGAGGCAGATTATCCGCCAGTGTTCAATggtctctcaccctctctctctctctctctctctctccctctctctctctctctttcagtattgatctgtctgtctattgGAAGCCTCTTCTCTTAGAGTCTCAGTTGCAGCTAATAGTTTTTATGGGACTCTTTCAGATAAGAGCTATTATAGTTTAGCCTCTCTCATAGAAACCAAAACACACCCTGAATATCAAAgaatttattttgctttctttcattcatgcacattttattataaagtgCAAGGCCATTAAAAGACACCAACAAACTGACATTAAGAAGACAATCATGCTGAGGTTCTTCAGTGGAGCTTATGGTGCTCTAATGATGCGAATATAAAATGTGAATTATGATTATCTCTATGCAGGCTAAGATCTGATGCAAACACTCTTACACAGACgttaacacacactgtgtgactACACTGATGTCACAGTCTGCATGATCTGGAACTTGACAGGAAACactttttattctctttaattCATAGTCTTTCTCCTCCTCCCCATTTCTCCCCACgttcttcttttttaatgaactgAGCTAACAACAACACTGTCATTTCTTTGGTCCAAAGATGATGGGATCAGTAGATGGAGATAAACAAGGAACTGTAACAGAAAAGAGAGGACGTGTTTGCAATTTATTTGAAAGAGACACTTGGAGAGACCTAAAGAGAACCTAAAACTTGGGGCTGAACTGATAGATGAAAATGGAACTTGTCCCCAAAACTAAATACACCCCCTTCAGGAGTGACTCGTTCAGTTCTACAGACGAGACAGCCTCTAATCCTTCTCTCCCTTCCTCAGCTCCCCTCACCCCTCTTACCCCTCCAAGCATTGTCTCATCTCTATCTTCCTCATCACTCGCCCCTATCCTGCCCCCGACGTCCCCTCGGCCAGCTGAGAACAGCCCCACTACGCTGTGCTCCTTCTTTCCCAGGATGGGCTCCCTGCGACTGGGCATGTCTGCCACCCTTCTCCCAGGCCTGAAGGCATCCAGCAGGCCCCAGGAGACCCCCAgcacctcttcctcttcctccgcTTCtactcctcctcatcctcctcatcctcctacTCTCCTTCCTCTAATggctccctctcctcctcctcgtccccCACAGGACATGAACCGGCTGGGTGGTGCCTCGCGGAGGGCCCGTGTGGAAGGGGGCCAGCTCGGGGGCGACGAGTGGACGCGCCACGGCTCCTTCGTCAACAAGCCCACGCGAGGATGGCTGCACTCAGACAATGTGGTCAGCACCAGTGGTGTCAGCTACACAGTTAGGTACATGGGTTGTGTGGAGGTGCTGCAGTCAATGAGGGCACTGGACTTCAACACCAGAACTCAGGTTACCAGggagGCAATCTCAGTGGTGTGTGAGGCAGTACCAGGTGCCAAAGGAGCTCAACGCAGGAGGAAGCCTACATCTCGGTGTCTGACCTCTATCCTAGGAAAGAGTAACCTCCGGTTTGCTGGAATGACAATCAACCTCACCGTGTCAACGAACAGCTTAAACCTACTGACAACCGACTGCAAACAGATTATCGCCAACCATCACATGCAGTCCATCTCTTTTGCATCGGGAGGAGATCCAGATACGGCAGAATATGTAGCCTATGTAGCCAAAGACCCTGTCAACCAGAGAGCATGTCACATCCTGGAGTGTTCTGAGGGCTTGGCTCAGGAAGTGATCAGCACCATTGGACAGGCCTTTGAGCTGCGTTTCAAGCAGTATCTGAAGAACCCCCCTAAACTTGTCACCCCAcatgacaggATGGCTCCTTTTGATGGCTCAGCatgggaggaggaagaagaggactTAGCTCCTCCCCCTGAAGTTCCATACTATAATAACTTTCCCGGGAAACAGCCACCCCCAGGAGGCCTGGTGGACATGAGAACTCGTCCTGGACACAGCACAGGAGCCACACTACCCTATGGCCAGCCTGGAATAAATGACATCCATAAGCAACCTCTGCCTCCACTACCAGTGGGAGCAAAAGAAGGTGGCCTGTTTGATGACCCCTCTTATGTCAATGTGGATAAATCCCGCCCCCAAGTGGCTGCGGCTAATGGCAGTGCTCACAGAGATGCTTTTGACATGAAGCCATTTGATGATGCCCTCAGTGTGTCGGGCACAGTGCCTCTGGCTCAGCAGCTGCAGAGTGAGCCCTGGTTTCATGGTCCCCTGAGCCGCAAGAAGGCTGAGAAGCTGCTGAGCAAAGACGGTGACTTTCTGGTGCGCGAGTCGGGTACCACGCCAGGCCAGTACGTGCTCACAGGCCAGCAGGGAGGCCAGCCCAAACACCTGCTTCTGGTGGACCCGGAGGGAGTGGTTCGTACCAAAGACCATCGCTTCGAAAGCGTCAGTCACCTGATCAGTTATCACATGGACAATCGACTGCCAATCGTATCTGCCGGAAGTGAGGTGTGCCTGCAGCAGCCAGTGGAACGCAGAGCCTAagtgtcacacacactgttcttctTCTGCCATGGTGTCTCCTTCCTTCTCAAACTCCTGTAATTACACTTTTCCAGAGATTGTCTCACTTTTTGCAGAGAAGATGAGCAACAAAAATAAGTATCAAAATTGAGCTCTGTACTTTGTCAATTCATAATGAGGCTTGGAAGTGATGCGATCATTGGACTCATGGACCAAGAGAAATTCACAGCCATCAGATTAAGCTGAAGAATAAAAGCGAGACTCCAGTGGGGAAAATGagccaaaaaagaaaatccaacaGACTGGTGTAGGATAGTTATGGTGTAATGTGATGTCACTTCCCCTACAAAATGGAATGTGTGATTTAAGCCTGAGATGTCTGGGCATTCAAGGGTTCAGCTGAAATATCCCTCAGTAACACTCCAAAGAGGACAGAAGAGAAGTGAAGTGAATCAGAGACTCGAAAGACTGGTAGTttggtttcattcattcattctcagaGCGTTAGTTTGTAAAGCCTGATCATGTAGAATCTTTGCGTACAGCTCTGACACGTAGACATATATTACAGTAGTGGGAACTCATTCAACCACTTGATTTAGTCGATTCATTTGAATTAATATATTCTTCAGAATAAACAAGATCCAACAGGTAGACCACTTCTAAGCACCTACTTGGAATTGTGTTTGAAATCTGCCCTAGTGGTTCCTATAAATCTCCCATTTAACATTTGGGAGTATTTCAAGGCCACATATCATTCTATATGCAAAGAGGAATAGATTATTTACTGTAGATTATAGATATAATGAAGTTAAAAAAGAGCACCAgatgtaaacaaaaaaagagagacctATTTACTTTCATCGAAATGATGAACCCACCAAGGAGCAGAGATCAGGATCGaaagaaacacaacacacatccaGAACCCTGCAATCTGGAAAGAATGGACTTGATGAAAGAGGCTGAGAGTGATAGACTGTATACAGAGTTGCTCCAAGCTTATCAGGACTCAAAAAGGGGAAAATAAATTCAATCCTCGCCATATCGCATCTTAAAGAGATAGTCATATCCTGTTGTGGTGATGTCATCTTCGAGAGCACCTGTAtcgtgaacttttttttttttttaagctgtatatttcacttttttatctGTGTTCACCTTGACAATCAGTCTCCATGTGTAGTTGAGTTgaagtttaaaaatgatgaGACTCAAAAAGAGTGAGGAGacataaaggttaaaaaaaaaagatagggatgctaaaatgaattaaaatattacatccTGTTGCATACAATGCACATTTCTGAACTAGAGTAACatgcaattaaaatgaaatgttttatcacCTCTGCCCTATaatcaagacacacacacactccaacttttcctgtttttatgtTCCTGTTTGAATTGTGCCTTTTCACTCAACAAAGCCACATCATTAGGATGCAGTAGAAGTAAAGATGAAAAATCAAGAACTTCACTGTTGTTCAGAGTTCATAACATTTTCTTGCCAAAATTCCTACACAAGTGTAGTGTGGATTGGTCCAGGTTTTAGTTGATGGCAGTCTTAGTTGTTTTCTTGCACATTCGCTTAATCCTGCTGGTAAATAGTGCTCATGTTTTAGTGCTGTGCTGTGGCTTAATGAAAACTTCTagatattgttttattgtttcttgCTTGTGATATAGTTTTCCACTGCTTGTGCAGAAATGGCTTACGAGCAtcataaaatgtacataaatatcACATATCACAATGTTCATAATTCTTGTAAGCTCAACCAAGACCCCGACTGGATAAGGCCAGACAGCCCTGTTATGAATGTCAGCTTTGATTGAAGAAGCAAGAACCCAATTAAAATGATGATAgtgagttttctttctttcttatggATTTACTAAAGCATCTGTTAACTGCAGGGTTTGAATTTATCTCCAAATGTACCACTCAAGTGCAAAGATTTCTGTAATTGGAAACATGATATCATCATAATTAGTTGGAGTTGATCTGTTCTAGACCCAGTTTGGGTAATATTAGACCTTTGGCATTGATGTGTAGGGCAGGCAGATTCTTGTCTGTGGCTCAGTTTGCTGTCTTAAATTATTTGAGTTCTTCACTCTGTGGGTGTGGTCAAAAAAGTGACTGGTGCAGTGCCAAGTGCGTTCTACccaggtgtgtgggtgtgatagAAAGTCCCGGAAAACACTGGCCTGCTCTGCCTCACTGACTCCTCCTCACTTGTTGCATGGAAACCCTCTGCAGTCTTTGTGTTATAGTGACAATggtttctttttgtgtgtgtgtgtgtgtgtgctcgccttatgactgtgttttttttttttttgttttttgcattttcaagGCCAAAGGTTTATTTGCCTTACCAGCACAAGACTTGTTTTTTATGTTGCCTTTTcttcttgatttattttaatatgcctttaatgttcttttttgggggaaaatacATGTTTACATATGTATCTGGAACTATAGATTGcatatataaatgcattatcAGACGA

Function

GO: NA

KEGG:

id description
K06279 SHC1; SHC-transforming protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16411 lncRNA downstream 6706 24573099 ~ 24578247 (-) False pbxip1b
TU16416 lncRNA downstream 29341 24552427 ~ 24555612 (-) False LOC113542209
TU16377 lncRNA downstream 193549 24390511 ~ 24391404 (-) True G13783
TU16376 lncRNA downstream 196950 24387289 ~ 24388003 (-) True G13782
TU16340 lncRNA downstream 266533 24317682 ~ 24318420 (-) True G13748
TU16422 lncRNA upstream 16021 24614253 ~ 24619949 (-) True G13819
TU16439 lncRNA upstream 115757 24713989 ~ 24718852 (-) True G13834
TU16983 lncRNA upstream 465236 25063468 ~ 25065486 (-) True G14303
TU16984 lncRNA upstream 465236 25063468 ~ 25065486 (-) False G14303
TU16985 lncRNA upstream 465236 25063468 ~ 25065486 (-) False G14303
XM_034307365.1 mRNA downstream 1129 24582501 ~ 24583824 (-) False lenep
XM_026940260.2 mRNA downstream 1129 24582501 ~ 24583824 (-) True lenep
XM_034302572.1 mRNA downstream 11465 24561500 ~ 24573488 (-) False pbxip1b
XM_026944847.2 mRNA upstream 172044 24770276 ~ 24807929 (-) False si:dkey-246i14.3
XM_026944846.2 mRNA upstream 172044 24770276 ~ 24807929 (-) False si:dkey-246i14.3
XM_026944844.2 mRNA upstream 172044 24770276 ~ 24807929 (-) True si:dkey-246i14.3
XM_026944707.2 mRNA upstream 437173 25035405 ~ 25052980 (-) False trim46a
XM_026944706.2 mRNA upstream 437173 25035405 ~ 25052795 (-) False trim46a
TU16407 other downstream 38116 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 184198 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 344874 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 1676851 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 802524 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 802524 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 803713 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 948802 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 948825 25547057 ~ 25589703 (-) False cadm4

Expression Profile