RNA id: XM_026939992.2


Basic Information

Item Value
RNA id XM_026939992.2
length 4290
RNA type mRNA
GC content 0.49
exon number 16
gene id rasip1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22731675 ~ 22746065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCTTCTCTATCTATAGGCACAGATCAGGGGAGCAAGAACGAAACGAGGGAGCCAGAGAAAGCAAAAGCAAGACTTATTAAAAGTGTGgggaaatgtgtttaaaattaaaaaacgaAATGTTAGGAGAACCAGAAGATTGATTTGGCCTGGAGAGAATACGGGATCAAGCAGAGGTGCTTCAGAGGTGCTTCACCGTGAGGCCGCCCCAAAAAATGGACTTATCAAccttaatttctttaaaataaggACACAAAACGTGGATCAAAAGTCAAAAGGTTTTGAATATATTTGCTTGCTATAGCAAAATTATCAGGACAACAGCATTGATTAAGGAGATTTAATCAGACCTAATACAAACGTGTCGCAGTGGGTGAGTCAGACTGACAGTCATCTGCTGATGGAGGAGTCTGGTAGCCCTCGCTTCAGGAAGCTTCATTTCCCTGTGGGCCTGTGGATAAATTCTCCACGGAAACATTTTGCCAAGCTGGGAGCACGTTGGCCAAGTGCAGCATCAGTCAAATCTACTACTAGCTCAGATGCGGCCTCAGTGCATGAGACTCCGCCCCCAGCACCTCCCACTGCCCACTCTTTCTCTAGCCCCTCAATTTCGCCACCCTCCCCTTCACCTAACCCTGCCTTCCTTCGTCCTCGGCCAGCCAATCAGCAGTCTCGTGCCAAGCGTCTGTCCCACCTCTTCTTAAGAGGGCGGTCCAACAGTGATCGTGACCGTGCCGTTGGAGAACGTGAGAGGGAAGTGTGGGCTCATTCAGCCactccatcactgcatcacTACCTGCCCCCTGCATCATCTTCTGCCCCAGGACTAGTGAAGATTTATGGTGATGCTCTCTCAAGCGGAGCTAACTACCGTAGCCTGCTGGCAAACATCCACTCTACAGCACGACAGCTCATCCAGCAGGTCATCACCCGatacactgagagagagagggagagcgagagtGATGACGTAGCTCTCCAGAAGCATTCTCCAGAGGACTTCCTGTTGTGTGATGTCATTGGAAAGCCCATTCAGCAGGCAGATGGTGTTGTACAATGGCAGACCGAATGCCGGAGAGGTGTAGCACCCTGGGAATGTCCCCTGCTGCTAGTGGACATGTGGAGGCCCAAGGAGGGCTTTGAACGTCGATTTGAGATCCAGCGGCGTGATGAGTatgagagggaggagagagaaaaagagaaggagagggagagagatggtgagagcTACCAAGTGCGCTGGAGACGGAGCCGCATGGCCTCAGGAGGTGGTCCTGATGAGGAGCGAGGTCATCGGGGGCGCAATACTGAACTCAGAAGGAGCATCAGTGATATGAACCTGACTCTGCGACGTCGCCAGGGCAACCAGGCCAACAACGACGCCAGACGTAGTGGCAACGCAACAAACAGCGGTGGAGCACAGGACAGGAAGAACATTGTGAGCATGATGGCAACAGAGCCAGGACAGGTCACTGGATCGCGGGTTGTGAGTGAGGCAGACAGAAACTCACGAGCAGCTGAAGATGAGAAAGATGCCTGTGACCTGGAAGTGATGTCCCAGAGCCTGATCCTCCCCCCTACAGACCGTCCTTACTTCCTGTTGCTACAGGGCTATGACCAAAGCAAGGACTTTGTTTTGTACATCATGACGGGCCACACGCACGTTTTCGGGCGGAAGCCGACATTCCGCGAGAGGGAGAAGGACAGAGAGCGGGAGCGGAAAGGGAAGAGGCCTCTTAGAGTGGACACTTTCCTCTCGGCTCCTGACCTGCTCGTCCGTCACCTTCTTGTCAGGAGGGACTCAGCTGTCCCTGAGCAACCTCGTGGTCAAGCTTTGTTGCGCCCATTCAGAGGAGGAGCTGTCAGTCATAATGGAGTTGTGCTGTACAGAGAGGCGGTCCTTAAACCTGGAGATCTCATAGGACTCGGCAGCCACTTCGTCTTCCTGTACCGTGACCCCAGAGTGACCCCCACCCCGCCCCTAGCACTGGCTCTACCCTTGCAGGCCGATGGGATGATTTCCTTTGGCTCTGGAAACATGATGGACAGACAGGAAGCTCTCAGGAAATATCTGGGATCCACTGAGGCAGTGCTGAAATTTCAGGCAAATCATGCAGACATCCTCTTACAGgAAATTATGTCAAAGAATTCAACTCCAGATTCAGGTGGTGGACCCTTAGCGCCAGCTTATCTGCTGTCACTCATGATTGACCATGCATCCAAACATCTGGACCCTGCACTAACACCCCAGCTGCTGTTAAAGGCAGCCAATCAGATAAAGGCGATTGTGTGGGAGAACATTAAAGAGTTTGGAGACAAACATCCGACACAAACctCTCCAGAGTCCGAGGCTGACCTTCCTCCTCCTAGCGTGGAGAAACTCTCCTCTGACCTCCGACCTCTCATGTTCTGGATGTCCAATGCCACTGAGCTCCTCAACTTCTTCCAGGTCAAAGTAGAGGCCATGGAGAAGGAATGGGAGTTCGAGGCCCCTGGTGACCCCGTTCTGTCAGCTGACATGGACACTTGCTCGGATGCCCTGGCGCAGCTGGATGATGTCATCATGCACActttccagcagtgtgtgtatcacCTGACGAAGACCTTATACTCCCTCCTTCCCACTCTATTGGACACCAACCCGTTCTCCAGCGAAgacaaagagaaggagaaggctGGAGATAGTCACAGAGTTGAAGGAGAAGGGGCTGAGGAAAGTGATGTATCTAATCTACCCCCCACTGTGGCAGGGCTGGTGGAAGTGTATCGCTGTTCCTTGCAGTTGACGCGCGAGGCCTGCCTCTCTCCACCTCTCACTTCCCAGACCTTCGGCTACCTGTTCTTCTTCACCAACACCTCACTCCTTAACACCCTGCTTGAGAGAGacagtttgttttccTGGTCACGTGCAGTGCAGATTCGCACTAATCTAGACCTGGTTCTAGACTGGCTACAGGGGGCGGGACTAGGAGATATTGCCTCGGAATTCCTCAAAAAGCTGTCAAACACTGTCAACTTCCTGTGCATTCCTAAGACCCGCCTTATCCAGTCATCTTGGGCCAGCCTACAGGAGGACCATGCCTTGTTAAGCCCTGCGCAGCTTCACCACCTTCTGACTCATTATAAGCTAGGACCAGCCAGAGCTCCGCCTTCCTGTTGGGCTCCGCCCCCAGGCACTGAACTCGGAGGCGATATTTTTGAGAGCTTCCTAGACCATCCACCTCTTATCCTACCCAATGAAACCCCGAGTCTGGACCTTACTCAGCCAATCCCTAACCCTGAGCTCCAAAAGGAAGTGACACGTCTGCGGACTTTCCTGTGGGGTCTGGATCAGGACGAACCTCCTGCCAATCAGAGAACTAGGTTGTAGTAGTGGAATACAGAATCTCTGGGGTTAACAGTACTTAAATTTATACAAAAGACACACCAGGGTCTTGGCCTATACAGCACATCTGTAAGATTGCAATACATATCACTTTCTCTCTATGTAAGTACAAATTGCTTTTGAGAGTTTTTCACAGAGTACTTCTAACTGGCATGGGCTGTAGTCCTTTAAAACTCTTAGGAAGGACTTAAAACGCTGTAAAAGACGCTTTTTCAAAATGCCCCAACGTTATTGTTTAAAGCAAACTTTGCTCAATTATGATGCTTACCCTGTATAACTTGGGCATCATGTTAGATAATTATCCATCATGTTACATATCCACACTAAGTTGTATAATCATTGCCTGGCTGCAGTGGTTACTttacttttagttttttaaagaatttagtTTATATTcactctttttactttttaggaATGCAAAACGTCATTGTTGGTGACACCTAGACCAGATATACGCTAATGTACACTAAAGGTCAGAATATAACACTAAGGGTTATAATAAATTCTTGCATCATAGTATGTATATGCCATATTTTAAATCACACCttgtgatgtttgtgtttttcctctatataaacacattttagttACTACAGTTACACTGAGCAACACACCTGACATCCTTTTCCCTACGATTTTCTCCATCATTTACAGTGAAGCGTGCCCCAATCTTCCCTTCCAGGTCCCCTCACTGCACTATAAAGTTGGTGATTCAGAATTATCCGTGATCTCACCCACCCTGACAACATGTTACACTCTAGACCCATCTCCAACATCTGCTTCTCACTATAATACACTGACCTCATAATACACTGACAAGGTTCACCTAGATGCATTACATATTATATCCATGTGTTGTATGTCCACATATTGCCAATAAAAAATGATTGTCATGAGACCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15000 lncRNA downstream 40149 22691288 ~ 22691526 (-) True G12642
TU14999 lncRNA downstream 40482 22690971 ~ 22691193 (-) True G12641
TU14997 lncRNA downstream 41490 22689976 ~ 22690185 (-) True G12639
TU14995 lncRNA downstream 42461 22688220 ~ 22689214 (-) False aicda
TU14840 lncRNA downstream 397071 22333125 ~ 22334604 (-) True G12498
TU15016 lncRNA upstream 3548 22749613 ~ 22753941 (-) False G12656
TU15017 lncRNA upstream 3548 22749613 ~ 22753941 (-) False G12656
TU15018 lncRNA upstream 3548 22749613 ~ 22753941 (-) True G12656
TU15019 lncRNA upstream 8673 22754738 ~ 22756614 (-) True G12657
TU15180 lncRNA upstream 78935 22825000 ~ 22829871 (-) True G12797
XM_026940182.2 mRNA downstream 22302 22704222 ~ 22709373 (-) True il11a
XM_026940104.2 mRNA downstream 29000 22695703 ~ 22702675 (-) True znf628
XM_026940004.2 mRNA downstream 36146 22693318 ~ 22695529 (-) True nat14
XM_034304263.1 mRNA downstream 39871 22686407 ~ 22691804 (-) False aicda
XM_034304191.1 mRNA upstream 114200 22860265 ~ 22872115 (-) False LOC113542546
XM_034304188.1 mRNA upstream 114200 22860265 ~ 22872115 (-) True LOC113542546
XM_034304197.1 mRNA upstream 114200 22860265 ~ 22872114 (-) False LOC113542546
XM_026940145.2 mRNA upstream 129622 22875687 ~ 22885619 (-) True LOC113542545
XM_026940144.2 mRNA upstream 129622 22875687 ~ 22885614 (-) False LOC113542545
XR_004578404.1 other downstream 1456334 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2907992 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2984792 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2985735 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 3028515 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 155286 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 155286 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1490227 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1645465 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1789795 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile