RNA id: XM_026940004.2


Basic Information

Item Value
RNA id XM_026940004.2
length 1443
RNA type mRNA
GC content 0.48
exon number 3
gene id nat14
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22693318 ~ 22695529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtgtgcttgtgtgctgATTCGGTTGATGCTCCTGCTGCCTTTACGCTACTTTGCGATTCACGAACGCAGATACGCTGAACGCGCGCTTGGCATATAGCGGTAACACTGTAGCACTTCGACGCAATGATAGCTTGTGGGCACTATGCACGGTTGGAAATTGTTTGAACCTTTATTCCTGAGGACGCAGGTTTGAAGCGCCATTAAGGCTGAATAAGATGGCGCCCTTGGACTTGGGAAATGTAGTGCTGCGACCGATGAGAGAGGAGGATATTGAGGCTGTAAAGGCTCTAATaaagCAAGGATGTGAAGGGATGGAGAACCGGCTCATCCTGCACCTCCTTACTAGACCATTGGTGGTCCTCCTGCTCGCCACAGTCTCTTCTGTGCTCCGCTTTGTAGTGCACTCCTTTATGCTAGCCCTGTTTATCCCTGTTTTCCTTCTCATCGTATACCTCAAGCTCACCATCCCACGGTCCATGGGCATCCTGGGTTCCAGCAGACCCTACTGGGACTACCTGGGCAGCAGCTACCATTCTAGGTCCCAACCAGACCTACCAAACCCACATGCTGCCAAAGCCAAGCTCATCACTGACCAGGAGAAAGCCAAACGTCGCAAGAAAGCCAAAGAGAAGTATAAGAGCAAAGAGGCAGAGAAAGGGAAGGCTGAAGACAGGGAGAAGGTGGATGAAGATGATCTAAAGGAACGGGCACGTGTTGCAGGGGAAGTGTGGGTCGCAGAGAGCGATGGTGAGGTGCTTGGCTGTGTTGCCCGAGATGGTTGGAGCCGGCATGGTGTGTACCGCATCTGTAGGCTGGTAGTGCAGAGCTGGTACCGTAGAGAAGGGCTTGGCAGGCTGCTAGTCCAGGGCCTGGAGTCCAGAGCCAAGCTGAGCGGCGTGCGCAGGGTCTATGCTCATGTGCCCTTCCCCTCCAACGTAGGAGAGGCCTTCTTCAGAAAACTGGGCTACCGGCTCCAGGGAGAGACTTCTGGGGTGGAagctgaagaggaggaggaggattaCGAGGAGCCAGGAAAAGGCTGGTTGGGCTTTCCAGTGACAAAGGTGTTTGTTAAAGACTTACGGGTGTGAATCGGCACATTTTTTGTAACTACAGCTTTGCCTGGAATCATAAAATAGTTACATAATTTGTGACATTACTGAAGTAGTTTCAGAAATACTGTAAAATCACTACAGTGAGGGAAACCCCACAACttcttcatttaaatttataatatttatttatattgtttatttattgtgacttttttctgttgcttatttttttctctctattcaatttaatttaaaatttgtcatgtcatttcagatttcagtccatttttattcatgttgCTGCACTGTAACAGAATAGTACTGAACTGCCAGTGGTCTTTTTGTCTAGAAACgatataaataaatcttctcTGAGACTGGTTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15000 lncRNA downstream 1792 22691288 ~ 22691526 (-) True G12642
TU14999 lncRNA downstream 2125 22690971 ~ 22691193 (-) True G12641
TU14997 lncRNA downstream 3133 22689976 ~ 22690185 (-) True G12639
TU14995 lncRNA downstream 4104 22688220 ~ 22689214 (-) False aicda
TU14840 lncRNA downstream 358714 22333125 ~ 22334604 (-) True G12498
TU15016 lncRNA upstream 54084 22749613 ~ 22753941 (-) False G12656
TU15017 lncRNA upstream 54084 22749613 ~ 22753941 (-) False G12656
TU15018 lncRNA upstream 54084 22749613 ~ 22753941 (-) True G12656
TU15019 lncRNA upstream 59209 22754738 ~ 22756614 (-) True G12657
TU15180 lncRNA upstream 129471 22825000 ~ 22829871 (-) True G12797
XM_034304263.1 mRNA downstream 1514 22686407 ~ 22691804 (-) False aicda
XM_026939968.2 mRNA downstream 3784 22686407 ~ 22689534 (-) True aicda
XM_034304251.1 mRNA downstream 5069 22686407 ~ 22688249 (-) False aicda
XM_026939966.2 mRNA downstream 7034 22673777 ~ 22686284 (-) True necap1
XM_026939768.2 mRNA downstream 48633 22620574 ~ 22644685 (-) True epn1
XM_026940104.2 mRNA upstream 174 22695703 ~ 22702675 (-) True znf628
XM_026940182.2 mRNA upstream 8693 22704222 ~ 22709373 (-) True il11a
XM_026939992.2 mRNA upstream 36146 22731675 ~ 22746065 (-) True rasip1
XM_034304191.1 mRNA upstream 164736 22860265 ~ 22872115 (-) False LOC113542546
XM_034304188.1 mRNA upstream 164736 22860265 ~ 22872115 (-) True LOC113542546
XR_004578404.1 other downstream 1417977 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2869635 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2946435 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2947378 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2990158 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 205822 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 205822 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1540763 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1696001 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1840331 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile