RNA id: XM_026940057.2


Basic Information

Item Value
RNA id XM_026940057.2
length 5225
RNA type mRNA
GC content 0.43
exon number 10
gene id si:dkeyp-77h1.4
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23872932 ~ 23891281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTTAGAAGCGGCTTCCTGGCCATGCGGCACGTGAGGGGTTAAATTCTGCAGCTTTTTCCCCGTTTGCACTGTGTGCTTGATTTCAAGGGCGACTTGGATGAATGTGATTTCGGGTTGAAATGAGTTTGGGTTGTTAGTTAGGTGGgctttttgattattttttgaGTGTTTTTGCTTGGAGAGAGGCGGTGCAGATTAGCCGCTGCTGAGAGGCGCTTAATAACGCAGAGCATGAGGCAAAACCGCCCCGTCAGCACCAAATCACACCAGTGTGGAGTGCGGCGGTATACAGCGCCATTCCTCTCAGTGCATAGCTTACTTAATAACCCGATTACCgcctataaactataaacatatCCGCTTTAAATAGCATCAGCGCCTGCATCAGAGCTAATTGCGGGAAATGTTGACAAGACCGGCGTGATGTTAatCCTGGCAAGGAGtgaaaaaactataaaaaggAAACGAGTGTGACTCCCAGTGCAGCTGATGCTGCTACCACAGGCAGTTCTTGATCAGACTGTGGTCAGGTTGTCCTTTGCTATCTGTCACCTTGTATAGCCTTATTCCGGGAAAATAACAAATCCAACATGGAGAGCCTGAGAGTCGTGGGCTTCAGCATGCTGCTGTGTGTGGCTTTCTCTGAGACTCTGAATGTGAAAGATGAGGTGGTGTTCTCGGGCGAGGATTATCATATCTTGCTGCCAGCGGGCAGTGCTCAGGTGATCTTCAAGCCCAGGATTGGTCCAGCAGGCCGAGGGCTGGAGATGATGAAGGAAGGGAATGTGGTAAGCCCACGGGTCAAAGTGAACCAGGCTCTGAGTCACCTCATTCTGGAGAATGTTGGAGAAAGCGATGAGGGACTGTACATCATCAAATCTGAGAAAAACCCCGAGGACATCAAGCAGCTCAATCTCATCGTCAGAGATTGCACAATGGAGATGAATGTGTTATATGGAGGCGACTTCCAGGTTTCGCTGCTTGGTGTCTCTACCCCTGTAGGCGTGGACTTTCGTCCCAGTGCCGTGGAGGCCAATCAAACGTCTCATCCCCCAATAGAGCTACTGACACCTGATGGAAGTTTACGTGAGGGTTATGAGGACCGCCTCAGCAGTACTGAGCAGCGCCTCGTCCTGAAAGCTGTGACTGGGACTGATGAAGGCAGCTACACCATCACTGAAGCCAATGGGAAAGTGAGCAAGAAGATCTGCCTTAATGTGAAAGAGTATCAAAAGTTTGTCACAGTGCCATATGGAGGCACGTTTAAGCTGAATCTACACTTGAACAGTTCCTCTGCACGTCTGATCTACTCACCCGACTCCAGCGGATCTAACAACCTCAACTGGGTGATTATGGAGAGGGGTGAGCTGAGCCTGCCTCCTGAGCGCAACCTGGAAGGCCGATTCTCCATGGAGGACTCGGTGTGTATCCTGGAGCAGGTGACGGCCAGTGACGCAGGACTGTATCAGGTCACTGATCTACAGGGCTTCCTCGTGTCCAAATTCTACTTGGGGGTGGAACCGTACAGGCTGCCTAATGTCTTTGTGGCAGTGATTTCTCTGGTGGCTTTGCTGGTAGTACTGCTGCTGGTGTGTTTGGTGTCATGTTTGGTTAAGGTGCGCAAAAGGGCAGCAAAAGCCCGAGCCATCGAGAAGATTGCAAAAAATGCTGGCAAAGAGGAAGGAGATGCCTTTAGACAGGTAGTGAAGGAAGCTTGCTCCCGTTACAATGACGAGGCTCCTGCTCTCTCACAAAAAGAAGATATTACAGAGAAATCCCAGAGCACTGAAATCAGCATTAAGGGTCTAGAAGTGTCTGCTAAGGACACAAGTATCCATGAAAAGAACTTGGAGACCAGTGACTCAGGAGTAGGCTTCACCACTGCTGGCCTTCCACTGGACAGTGATACTGAGGCACCGACAGTACCCATTACAGAAGCTGATTTCCTGAGCTCCTCTGTTGCTTCTGATGCCAAACCTACTGCCAAACAAGAGTCCAAACTCACTGTGTCTTCATCTCCCAGACTAGCAACAACCCCTGAGGCGAAGCCAGCATCTGAGACACCAGTGTCAGCAGCTCTGAAACCAGCACCATCTCCTGAACCCAAACTCTCTGTAACACCAacacaagaaacaaaaatgacCATCTCACCCACTCCTGAGTCAAAACCGAGCTTGAGTCTGTCTCCAGACCCTAAGCCTGCAGTGACACCTGAGTTGAAACCAGCGGTTAGCCCTACTCCTAAATCCACACCAACCCTAGAAGTCAAACCAACGTCCACTTCTGAAGTCAAACCACCCCCAAGTCCTGAACCTCCAAAAGTGGTGACTCCAACGCCTGACTCAAAACTAGCCGCCACTCCAACTAAAATGGCAGTCTCTCCAGCTTCTGATTTCACCTCAACCAAACCTGATGCCACACCATCTGCTGTGAGTCCATCACCAGCAGATACTATGGCAACTACTGACACCAAGCCTGCCCTCTCTCCAACTCCAGAACCCAAACCAGCTCTCTCACCAACTCCTGATGCAAAACCAACCACCAATGGTACCCTTGAGTCCACACCAGATATAGGATCTTCTGAGTCAAATGCAATCCCTGCAAAAACCCCAGAGACTGATAAAAGCTCCGTAAAAGTTCCTGAGGTCATCTCAACTGGGGGTCCAACTCCAGAGGCCAAGCAAGACTCGGCCTCCCCCAGCGATGGTGCTCCTCCATCAGGAGTGGAGAAAACTTCCACCACCTGAGGTCCAAACCACTGCCTGATTACTGCTCCCTCCACATGTCTTTTAACACCGCTGACAATCGAGATCTAACAACAAGCAAAAACTCAACAACTTATTATGGAGGGCAACTTTAGTCTACTAAATCTCACTCTTAATGcataactaacacacactgtagattTCCCTGATTAATTCCTATTTAATCACTTTGTAACACAGCTTCATAAACACAGAGATGTACCACTACAGGTACCATTACAAGTATTCCATTGACTGTTTATCTAATGCCGGCCGAGAAAGGCTGCCTCTTACATGCAAACAAGATGTACAGATGCAACATCCTTATGATACCTAAATATGATTCCACTGCATGCAAAAAGTCAAGAGAATGAACTAACTTCAATTAATCTTTGATGTATTTGGAGATTGTGGTAGTGAACTGGGTGACGGTGACCATAGACCCAAAAGAACACTCTTCTTCTCGTTCATACCCAAGAGACATTGGCTCCATATGTTTCTTTTTAAGCATTAAAGAATAACATCCACATCAATTGAAATATCaacattaaaaatcagaaaatactATTGAAGGTTAAAAAGTATACTGATCTAAAAATGTTTactgagctgaaaaaaaaagtttactggGACTTGGGATCTGATGCGGAACACCTAGAAATGCTTGACAATAACCAAAACCCGCAACATTACCTGGACCTTTTTGATGGAACTATTTTTGGAGTAATTCCACTGAAACCGAAGAAAATTTCCAGGCCACATTACAAATGCTAGACACCATTTTACTGGATCCTTCCTCCCAGTGTAAACACATGAGCAGAGCTTTCCAGCACAGGACTGACTTAAAAAGGTAATTGAACAAAACAGACTCTAATGTCATAACATTCCTTCCCTTCAAGTTATTTCTAGTGTTAAATACTTTCAGTAatataggcaaaaaaaaatatttagatttagatctaACTGGCATGAGTCTGTTGCAGTATTTGTTTATGGCTGCCTATTCTTACTAGTTCTGAATTGTGTATTGTTTTATGAGGAACAGTAGAACGCTCTTGAATGGTCCCAGATACTTGTACTTGGTACTGGTCTTAATCTTGGACTTACTGGAATACAGGGAGCTGATCATAAATCGGTGCTTTTACTCCAGGAATCTTAGggatgattgattgattgattgattgattttcgAAAATCAAGTTTTACCATCAGCTGTCAGAATCAGTTTACAGAGATTTTGGGTGCCTCTTGTGGAATTGGAACACCACTGCCCTTTTGCAATAGTGTAGGAAAGGAAGCAGTTCTTTGTGACTTGTTTGAGTGGGATTTTCTTTGATTCAGATTGTAGCTCGTTTACATGACGTCGGGGTGTAACTACTGAAGGTCAGATTTTAGTACTGGGTAGATTTTGCTAATGCAGATGATTTCACTAATGCCTTTACCTCGTGTTGTAAATCATCTTAGAGACACTAAGAAGGCTAACTTTACTGTAGTGCACTGATGGAAAAAAGGTCTAGACTGAGTTTCTGATTAAAGCACAAAATTTGATCTTGATCTGAGGCTTTACTACATTTTTGAAACCACGAATCTTAGGCTTTGCCAACACCCTCCTCCCTCACCATTATCTGAGAATGGCCTTGTTCTTTCTAAGCATTTTACACTTGTATCAGTATTACGAATTGAAATTTTAAAGCCATACGGTCttatagtgtaatataaaatgacacatAATGTAAGTGTGTTTGTAAGTTACTTGTATTACCCACTCGTGATAATTAGACACCTTGAGTTTAAAAGTTCTATATGACTTTTTGGCTTTTTAtcactgaatatactgtatgagaAGTTTTACACCAAAATGTTGCCTCAATATCTTAAAATCACAAAATTATCAGATAGAATCTTATATTTATAAGGTCTCAAATGGTTCGCAAATGGCTCTGTAATAAGATTTCTGATATAGAATTAGTAGCTGTAGTTGCAGAGGGAATGTTAGCTACCAATATTACCAATATTAGCTAATAAATCATGCAGTCACTCTTGCTTTCACAGTCGCTCTCTCTAACCTAAGTGCTATAGGCAATGAGCCACTTTACTCCCCAAACAGCTGGTCTGTCATTTCAAGATCTATTTAAGCAATACCAAGTGCAAAGACTATGCACATTCACGCACATCAGTCATTAAGGCAGGAGCTCCTAAAACGGGTTCTGCAAGGCAATGACAAAGGATATGCACCATTTTTTGTGATGTCTTcacaaaaatgtacaattattaATATGAATTGGTGAGTTGCACATCTAATATATAAGCATGCTATTATAATATCCATAGTCCCtttgtaatgatttatttagaTCCAGCAAATCTAATCAGATCCAGAATGCCTCATTCAAGTATAGTGGCCATGCATTTCACTGCGTTCTGTATAATTCATCAGGCAATCAAAAAcgcactataaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15941 lncRNA downstream 56874 23814277 ~ 23816058 (-) True G13424
TU15915 lncRNA downstream 198787 23673787 ~ 23674145 (-) False dedd1
TU15881 lncRNA downstream 344992 23527690 ~ 23527940 (-) True G13369
TU15873 lncRNA downstream 366634 23506020 ~ 23506298 (-) True G13361
TU15865 lncRNA downstream 372941 23477319 ~ 23499991 (-) False cicb
TU15956 lncRNA upstream 20078 23911079 ~ 23912280 (-) True G13438
TU15974 lncRNA upstream 130529 24021530 ~ 24021918 (-) True G13452
TU15987 lncRNA upstream 151253 24042254 ~ 24042606 (-) True G13465
TU15989 lncRNA upstream 152443 24043444 ~ 24043657 (-) True G13467
TU15992 lncRNA upstream 157102 24048103 ~ 24049565 (-) True G13468
XM_034308137.1 mRNA downstream 10009 23856083 ~ 23862923 (-) True ino80e
XM_026939644.2 mRNA downstream 19235 23850763 ~ 23853697 (-) True LOC113542255
XM_026940049.2 mRNA downstream 25566 23827438 ~ 23847366 (-) True vars1
XM_026940071.2 mRNA downstream 77816 23731602 ~ 23795116 (-) False si:ch73-22o12.1
XM_034307739.1 mRNA upstream 488 23891489 ~ 23909121 (-) False mdc1
XM_034307734.1 mRNA upstream 488 23891489 ~ 23909121 (-) False mdc1
XM_034307743.1 mRNA upstream 488 23891489 ~ 23909027 (-) True mdc1
XM_026940058.2 mRNA upstream 22088 23913089 ~ 23918564 (-) True tubb5
XM_026940053.2 mRNA upstream 43743 23934744 ~ 23977540 (-) True ddr1
TU15196 other downstream 964830 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 964830 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2597591 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 4049249 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 4126049 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 345291 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 500529 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 644859 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1509755 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1509755 25400756 ~ 25404306 (-) False G14258

Expression Profile