RNA id: XM_026940104.2


Basic Information

Item Value
RNA id XM_026940104.2
length 5441
RNA type mRNA
GC content 0.50
exon number 7
gene id znf628
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22695703 ~ 22702675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGAGCCGGAAGCAGGCGGGTGACTGTTGGTTAGTTTGTGCTCGACATTATTGTTAAGGTTGTATGGACTATCACTGCGGACTTCAGCCCCCGTTTCAATACATCAAAACTGTTTAGTAAAATTAATCATTACAGGCAAGTGACATATGCATAGTGAATGTGCTGAAATATCGAGAAATTCTGCGACGCTTGAGAAAGCAGGACGGCAGGGAGATGGATGCGGGAAGGCCGGCTCGTGACTGGACAAATCCATGCACACATCGCTAAGAGAGGAAGCAAATGATGATTTCTACAACATTATATACTGTGAGGTTCTGGCAACTGAAGTGAAGAAGTTACAGTACTCATTTCAGCTTGGATACACAACATCAGCAACACTCCATACATCTAAACATCTGCAATGGCTGCCGTCAGTTTGGAGGATCCACAAGACTAGTAATCTGCACTACGACCCAGAGCGTCCTCCTCTGCTCGTAGGGTACAATGGCCAACTCTGTTGCTACCCTGGTAGTCCAAACGGAGCTTCTTCCCAGCCAGGCTCCCTCGTCCCTCTCTCCTTTTCCATCGCTTCTTCCCTTCAGTGGAAGAAGAGGATAACGATGAAGAGAAAGGTGGAGATGAAGAGAAAGGGACAGAAACCGTTGTGCTTACGGGAGTCGAGATGGTGACGTCGTCGACGTCTCCAGGGACGATGGGGTCCCAAAATCCTGAACACCCCTTTCAGTGTCTAGattgtgggaagagttttaagTGGTCTTCCAGGTTGGCACATCATCAGCGTAGCCATAACAACGAGAGGCCATATCGTTGTAACCTCTGCCCCAAGGCTTTCAAAGGCTCATCTGCTCTGCTCTATCACCAGAGGTCTCATTCAGGAGAGAAGCCTTATAAATGTGAGGATTGTGGTAAAGCATTTAAGCGCTCGTCTCTCCTCCAGgTCCATCGCAGCGTGCATACAGGTTTGCGTACCTTCCAGTGTCCCTACTGCCCTCTCACCTTCAAGTGGAGCTCTCACTACCAATATCACCTACGCCAACACACAGGCGAGTGCCCTTATCCATGTGACAGATGCCCCAAAGCCTTCAAGAACTCCAGCAGCCTGCGTAGGCACAAGAACGTGCATTTGGGTGTCAAGCCGTATGTCTGTATGGTGTGCAGCAAGGCTTTCAGCCAGTCAACCAACCTAAGGCAACACATGCGCATACATACGGGCGAGAGGCCATACATCTGTGGTGAGTGTGGTCGCAgcttcacacactcctccaacCTGGCGCTTCATCGCAACTCTCACATAGAGGTCAAGGCTCAGGGCGGGGGGAAGACAAGAAAGGCAGGGTCACGGACGAATGTGGAGGTGGTGCTCGAGGGGGCGACCTCAGACGATTTGAAGGCGGTTGAAATGACCATATCGGACATGGTGGGCCTTGTAGGTGGGCAGGAGGGGGGAACTAGTCAGGTGTTCCTATCTCACCATGTGCCCTCGTCCTGTACGCCATCCTCGGCTGAAGGCAGCCAGAATGTCCTGACAGCCACAGGCGCAGAGCATGTACAGGTGAGCATGGAGGAGTCAAGGGAAACAGGTGCTAATGTGTTGTTGTACAGCTGCGGCAGCTGCAACGAGACATTCGGAACCCAATCACACCTGGAAGAACATCAAGCCTTGCATCTGCACAGCCTGGGGACGGGGGATGGGGGCGAAGACATCAGAGGTGATGGCATAGAGGCTCAGGGAGGTGGGGTTTCATTGGTTGGGATGGCCCCCTTGTTGGCGGACTTTGAGGAGGTGGTGGAAACCACGACAGTGTCAGAGAGTGGGCAGGGGACAGAACTACTTGGATTGGGTGGTATTGGGGGTGGATCGGGTCAGGTTCAGTATGACTTGCTCCAGAGCTTCACCAGCTCTGTGGCCCAGATGCCCTCAGATGACACCACATCCATAGTGGACACGACTGTGGCTACATTGTCTACAGAGTGTGCCTACTGCGGTAAAAGGTTCAAGAACAGCAGCTCGATGAGCAGACACATGGCACAGGTGCACCCTCTGGCACTGTCCCAGTCCAGATCTCAgttcagctgctctgtgtgtgacCGCTCCTTCCCCCTGCTGTCGTCCCTTCTTACCCACCAGCTCTCGCACACTGAGGAGCAGAGACTGCTGGCTGAGGCAGAGGCTGAGATAGTCTGCCCTCCCTCACTGTCCCTCTCACTGCCTCTGTCTTCCTCGTCCTCTGccaagagagagggggaggagggggagggagaaagggagaTCCATGTCAGCCTCATTGCTGTCACAGAAGAGGGAGAGAAGCAAGCTGTGAAACCAACCAACAGGGCATCAGGGAAGGCTGGAAGAAGAGGAGGCGGCAGCAAGGGCTCTGCTGCAAATAACGagaGGCCATATCGGTGCTTGGAATGTGGGAAATCCTTTAAGGGTTCATCAGGTCTGCGCTACCATATGAGAGACCACACAGGAGAGAGACCGTACCGCTGCACAGAGTGTGGAAAAAGCTTTAAGAGGTCATCTCTACTGTCCATACATCAAAGGgtgcACACAGGAGTGCGAGCCTTCCAGTGTCCCTACTGCCCTTTGACCTTCAAGTGGAGTTCACATTACCAGTACCATTTGCGGCAGCACACCGGTGAGCGGCCCTATGTGTGCCAGGAGTGTGGCAAATCATTCAAGAACACCAGCTGCCTGCGGCGGCACAGCCAGTTGCATTCGGGCCTGCGACCACATGCCTGTTCTGTGTGCGGCAAGGCATTTTCGCAAACTTCCAACCTAAAGCAACACGAGCGCACACACTCGGGCGAGAGGCCTTTCCAATGCGCGCAGTGCCACAAGAGTTTTACACACTCCTCCAATCTTCAGCTTCACCTACGCACACACTCCTCACGCAAAGACTACAAGTGTCAGCGCTGTGGAAAAGAATTTGTCATGCACTCCTACCTGCAGCGGCACCTGCGGACGCACAGCAGCGGTGGAGGGGCCACATGCACAAAAGAAGCAGGGAAAACCACTAAGAATGGCAGTGGAACCTCGGAGATGTCAACTACTACTCTGAGTCTAAATATGAATGCAGGAGGAGGGCTCAGTTCTCTGTTTTCTAATGAAGGGAATTccacactcattctctcaccatCAAATTTGGACATTCCTCCAAATACGtcacaaaattattttatgatcCAGACACCCACAGGACTACAGCTGATCCCGCTGTCCAATCCAACACCCACACAGCCTGTCCCGGcccctccacctcctcctcctccacctccaccaccaccaccaccaccacaactgCCATCCCAGAACTTCCTGCTTCTTCAGTGCCAGTCCACCAATGGGAGCCAGCCGAGTCTTATTCTTGTTCCCACAGCATCCAATACGAACACTCTTCCTGCTCCCTCAGCACCACAGCCCCTCCCCTTGGTGCAAACTATACCAGCACTGCCACAGATAACCACTTTAGCTCCAGCCCAAACCCAGATATCACATTTTCAGCCACTCCAGACCCAGCAGAGGTTTATTTTAACCAACAACAGTGCTCCCCTCATCACTGCCCCACCCCAAAACACAAAAGCCATTACTAGACCAATTTTAGGAACGCTTAGCCACACCAGGAGCCCTAGACCCAGACGTGGGCGCAAAACTAAAACTCAGAAATCTGGGTCCTTGGTGCAGACAGCGTCTGTCCCAGCAAGTCAAGGATTAGTTCCTTCCACTATTTCAACAACCACAACTGCTGCTTCTGTTGCATCTTCAACAACCTTGTCCCAGCAACATAATGTTCCAACATCTGTGCCACCACTGAATTCAGATTCTGTACCTGACACACCCTTGGCCCCTGCTACTGTCACTGTATCAGCAGTGACCCCAACTACACCCCCAACGGACAGCCACTGTATTTTGACAGGTGACCACCAAAATGCTTCCGCTGCAGAGGAAGTGCAGAAACTTCCAGAGACAATACCAGAGGAGcgttttgttctgtgttttgaGAAGGAGACTGAGGAGAGAGAGCAAGGAGACGAGATGGAGGTGAAGGTGGAGATGAATGAAGGAGTAGAGGGAGAGAGGTCGTATGTGTTACATTTTGAAGGAGAAAGTGAACATGGGGAAGAAGGAAGTGAAGACAGAGGGGAGAAATCATACGTTCTCCGATTTCATTCAGAGGAAGAGATGGAGGGTGatggagaaaaggagaaaactgGGATGGTTTCTCTTAATTTGCTACAAGATTGGAGTAGAGCGAGGGAAAGTGAAAGAATAGCAGGGTTTGAAGAAGGTGTTGGGGTGGAAGAGAAAGCATTTGTTCTTCATTTCCAAACAGATGCTCCAAGTGACGAAGATGTTCCACCAAATGCTGGCTTTCCTGAAGGCCCTAGTGAAGAATTGGGTCTTTCTTGCCATCCTGCCCAAGCCTTAATGCCTCTTGGTGGACAGGAGGTTGTGTTTGAATTAGGCAGTGAGGCCAAAATAGATGCAGACACAGGCAGTGGGGAAAGTGTTCAAATGATTGCAGTCATAGAAGGTGGGGGCAGCAGTTCTGAGACGGGAGGCAGTTTTACTAATCCTGGGGGAGTCACTGGGACAGGAGCAGGGCAAATGGGGAGCATATTTCAGCTAGAGGGAGGAGAAGGTATTGTTATTATTGAGGTTAGTACCAGCAGTTTGACAGAAGGAACAGAAGGAGTTGCGGTAGGATTAAGGAACATGGACAAAGAAGGCACTGCATCACAGGAAGTGGCATCGGAGGAGCAGAAGATACTGGAAACTGAGAGCAGACTATCAGCCAGTGTGAACGGGACCTAAGACTAAGCTCAGAAGGAATCTCAAAATGAAGCCTGTGTATTGctctaagacacacacacacacatggtcctACTAACCAATGCACACTACTAACTACCAGCAACCTGAGTCTTTGATGACACACATATTTTTAATGATGCCTTTTATGATCCAGATGACTAAACCTAAAGCAGTTATTTAGGCCTCTGTCTTTCAGCTATCAGGAAAGTGAAATGAGGGAGAAGCCATGCTTTATAGCAAGAATTGACAGGCAAATGCATGGAAAAATCGCTTTTGGTGCAATGGTTGATCTTTTTATGTTGTCCTCTTACTTCAGTCTCTTGGAGTGTTCTGAGCACTACCTAGAATAAGGTGAGAGTTACTCACCAGCCCATAGAGGGAGTCCTTtcatacaccacacacaacagatatgaactttttttttttttttttttttttctttccaaatacTACACTTAGAAGGTGAATTGAAGAGGAGTTGCTGAAGAATGTTGGACAACTGTAAACTAATATGCTGTCATGTTGACAGCCCAAGTGTAACATGAACAAGAACTGTGAATATGTCTATAGTCTGTTTAGTTTCAATATAATTGATATTAGTAAATTATCATATTCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15000 lncRNA downstream 4177 22691288 ~ 22691526 (-) True G12642
TU14999 lncRNA downstream 4510 22690971 ~ 22691193 (-) True G12641
TU14997 lncRNA downstream 5518 22689976 ~ 22690185 (-) True G12639
TU14995 lncRNA downstream 6489 22688220 ~ 22689214 (-) False aicda
TU14840 lncRNA downstream 361099 22333125 ~ 22334604 (-) True G12498
TU15016 lncRNA upstream 46938 22749613 ~ 22753941 (-) False G12656
TU15017 lncRNA upstream 46938 22749613 ~ 22753941 (-) False G12656
TU15018 lncRNA upstream 46938 22749613 ~ 22753941 (-) True G12656
TU15019 lncRNA upstream 52063 22754738 ~ 22756614 (-) True G12657
TU15180 lncRNA upstream 122325 22825000 ~ 22829871 (-) True G12797
XM_026940004.2 mRNA downstream 174 22693318 ~ 22695529 (-) True nat14
XM_034304263.1 mRNA downstream 3899 22686407 ~ 22691804 (-) False aicda
XM_026939968.2 mRNA downstream 6169 22686407 ~ 22689534 (-) True aicda
XM_034304251.1 mRNA downstream 7454 22686407 ~ 22688249 (-) False aicda
XM_026939966.2 mRNA downstream 9419 22673777 ~ 22686284 (-) True necap1
XM_026940182.2 mRNA upstream 1547 22704222 ~ 22709373 (-) True il11a
XM_026939992.2 mRNA upstream 29000 22731675 ~ 22746065 (-) True rasip1
XM_034304191.1 mRNA upstream 157590 22860265 ~ 22872115 (-) False LOC113542546
XM_034304188.1 mRNA upstream 157590 22860265 ~ 22872115 (-) True LOC113542546
XM_034304197.1 mRNA upstream 157590 22860265 ~ 22872114 (-) False LOC113542546
XR_004578404.1 other downstream 1420362 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 2872020 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 2948820 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 2949763 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 2992543 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 198676 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 198676 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1533617 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1688855 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1833185 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile