RNA id: XM_026940145.2


Basic Information

Item Value
RNA id XM_026940145.2
length 2305
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113542545
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 22875687 ~ 22885619 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCTGGAGGAAGTCAGCTAGAACTGATCGAAGTGGTTATGTTCTGTAAGGCAGTCTACTCAGAGGCTAGCATAAACACAGATGCTTATACATAGACTGCTAATGAATCCCTTGAAGCCCATGTTTATTGAAAGGttggagggagagaaaggagaagacAGAAGAAGGAGTGTTGGTAGTTTGAGAGAGAATGTGGAAGCTTAAAGGACAGCACCGAGCTCAGGATGCCAGGATGCGCGGGACAGAGGGAGCCTACATACGTTGTTCATGTTTCTCCCTCTTTTAGCTTCTTGTTATGGACATTGTGTCTAATTGGAAATTTGACAATTCTAAGAATCAGTTAAACAGTGCAATTCTGAGACTTGGGTTCTAAGAAGGAGTGACAATAGCTTTTTTTCATGCAGCAGTGAAAAGAAGAGGGAAGTGGCTGTGTTGTGATAATGGTGTGTTAGTATAAAAGTGTGATGAGGAACTGTGAAGTAAGCAAGACATGGGATGAGCGTAAACTGGGCTTAGGCATTTGTGAATTTCTCTGACAGTGATTCTCCTGTTTCAACTGAAGTAAACACATCCTTATTCTTATCCACATCCTTGTTCTTGTATATGGAATTTGTCTGAGCATGTGAGGACAAGAATTACGGTAGTTACATAAGTCTATTTTTTTTGGCCTTCCATTAGACACTGGGGGTTTGGTCAAGAAAACGAAACAGGATCAGCACAGAACGTGAGAGACCATGGATGCAGAAAAATTGACTGAGGTGGAGATGAAAGAGCTTACTTCAGCAGAAGTACAAGATGATAAGGatgcagagaaagacaaaatgGGAGGAACAAAAGCTGAGAAAGgggcagaagaagaagaaaaaaaagaaaaagaaataaaagaagcagCTAATGTGTACCACGAACTGAAGAAGCCAACAGAAGATGTTTATAATCCTTCAATGCCTACTTCCAGTTCCAAACACGATGAAgAAACCGAGAAAAaggcagaagaaaaagaaaaaaaagaaaaagaatccAAAGAAGAAGGTAATGTGTACTGCAAACTGAAGAATCCAACGGAAGATACTTATAATACTGGAATGCCTACTCCCAATCCCAAACGCAATGAAGctgagaaagtgaaagaaatagaaaaagaagaagaagacgaagaagacGAAGAAACTAATTTGTACTGCAAACTGAAGAATCCatcagaaaatgtttatatgtctaCGATGACCAGTTCCACTCCAAAACACAATAAAGaTATTTACAAGAGGATTTCCGCTGTTTTCATCATTCTCTCTGTGCTCTTACTGGCTGTGGTTTTGGCTCTGGCTATGAAGTTAAATGAAGGTCAGTCCATCCAGAAGTGTCCAGAGAGACCTGAAGCTGAAGAACCTGAAGTTAAACAACAGAACTGTACCCGCGAGCTATGTGAGGACCTGTACCCCTCAACGAACCCTGGGTATCAGTGCTCTGAGTGTGGGAAGGGCTGGGTGAGGTTTGACAACTCCTGCTTCTTCATATCTAAGGAGCGTCTAAGCTGGCAGGAGAGCAGGAAGACATGTCAGAAACAGGGTGGAGACCTGGTTGTCATCAGAAATGAATATGTGCAGAAAACTCTAACTAAGTATTGGGGCATGCTGTACTGGATCGGGCTCCGTTATTCAGAAAAGCAGCAGTGGATGTGGGTTAACAATACTGCACTAACCAAGAGCTACTGGGCCCAAGGCCAGCCAGAGTCAGCCTCTGAAGGCTCCTGTGCACTGCTAAGAGGACGGGGGTCACCCACAAACAACTGGCATTCAAACCCCTGTGTGGTGTCCTCAAATTACATCTGCCAGAGAGGTTAAAAGTGGAGAATGATCAACCATCACCATCACATACATCTGCTACATTTGCCTTTAATATCATCATTTTACTCTTTTAGTTAACTTTCACAAATGCAgttcataaatattaacaaatacagAATCAGGACATGAAACAATCCTGCTCTGTGATGCACAATCAAGTAGACATGCTATGTATTTTTCACGATAGAAAAATGAGACATGCTAAGTGTATTCATTCGAAGTGACTCTCTGCTTATTTTACCTGTAAATTGCAATGCTTTTAATTGCACTGATACAAAATTACTTTGCACTTTTCTATAAAACCTTATTTGCACTAAAAAGTTTGCAGAATGTCttataaaactaaatatataCCTATGTAGCTGCCTTTAAAATAAGTAGCAAGATGTTGTTTTTACAGtgattcaaattaaaatataataaaatttgatttttcactcaataaaatgatgaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15191 lncRNA downstream 6276 22869159 ~ 22869411 (-) True G12808
TU15188 lncRNA downstream 11669 22863485 ~ 22864018 (-) True G12805
TU15180 lncRNA downstream 45816 22825000 ~ 22829871 (-) True G12797
TU15019 lncRNA downstream 119073 22754738 ~ 22756614 (-) True G12657
TU15016 lncRNA downstream 121746 22749613 ~ 22753941 (-) False G12656
TU15200 lncRNA upstream 33666 22919285 ~ 22928564 (-) True G12816
TU15203 lncRNA upstream 52607 22938226 ~ 22938796 (-) True G12819
TU15307 lncRNA upstream 234991 23120610 ~ 23121495 (-) False LOC113542417
TU15311 lncRNA upstream 245656 23131275 ~ 23131498 (-) True G12917
TU15401 lncRNA upstream 247307 23132926 ~ 23165584 (-) True cxcr3.2
XM_034304191.1 mRNA downstream 3572 22860265 ~ 22872115 (-) False LOC113542546
XM_034304188.1 mRNA downstream 3572 22860265 ~ 22872115 (-) True LOC113542546
XM_034304197.1 mRNA downstream 3573 22860265 ~ 22872114 (-) False LOC113542546
XM_026939992.2 mRNA downstream 129622 22731675 ~ 22746065 (-) True rasip1
XM_026940182.2 mRNA downstream 166314 22704222 ~ 22709373 (-) True il11a
XM_026940149.2 mRNA upstream 1575 22887194 ~ 22892627 (-) True LOC113542547
XM_026940272.2 mRNA upstream 16615 22902234 ~ 22908140 (-) False zgc:92606
XM_026940066.2 mRNA upstream 39934 22925553 ~ 22931345 (-) True tpi1b
XM_026940258.2 mRNA upstream 119892 23005511 ~ 23010223 (-) True gnb3a
XM_026939752.2 mRNA upstream 129236 23014855 ~ 23025868 (-) True p3h3
XR_004578404.1 other downstream 1600346 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 3052004 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 3128804 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 3129747 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 3172527 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 15732 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 15732 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 1350673 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 1505911 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 1650241 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile