RNA id: XM_026940169.2


Basic Information

Item Value
RNA id XM_026940169.2
length 3177
RNA type mRNA
GC content 0.44
exon number 12
gene id gnl1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 23991664 ~ 24001583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACAGAAAAAAGTAACGTGCAGCAGAAACTTCACTGTAAACAGTGAGGGAGCTAGCACAGCTAACTGGCTACAAAAGCAGCAGCTAGTGCTCGTGGTGTTCTGTCTGCCTCCATTCCAACATGCCTCGGAGGAAGCCGTTTAgcaataaacagaaaaagaaacaacttCAGGTCAAGCGCGAGAAAAAGAGAGgtgatacAGGCTCGGGTCAGAGTAGCCGGAATGCAAGTATAGAGAGAACCGTTAGACgggacagacagtcagacacaTCAGACAGCGAGACGACGGATATAAGGAGGATCAACCACCAGCCTGGCACCAGAGACAGCAGATATGACCCCAACAGGTTCCGGCTTCACTTTGAGAAGGAGAGCAAAGAGGAGgtggagaaaaggaagaaaacggCCAGAGAGAAAATATTGCAAGCAGTTCCAGAGAGAGACCTGGAGATGGACATAACAGAGGTCTACCCTGAAGAGCAAGGGCTGGATTTCCCACGAAGGCCCTCTTGGCATTATGGGATGCACAGAGAAGAACTATtgaggaaggaaaagaaggcATTTGATGAATTTCTGGAGGCTCTTCATTCCAAGAATCCTACTGACTCCCTCAGCCATTTTGAGCACAATCTGGAGaCATGGAGACAGTTATGGAGAGTATTAGAGATGTCCGATGTCGTTCTGCTTATTGTGGATATCAGACACCCAGTGCTGCAGTTTCCTCCTGCTCTGTATCACTACATCACAGGTGAACTGCAGAAGCAGGTAATTGTGGTGCTGAATAAGGTTGACCTTTGCCCTGCGCCACTTGTGTTGGCATGGAAACACTACCTGAGCAATCACTTTCCTCACCTGCAATGTGTGTGCTTCACTTCACACCCTGGACAACCTTACAGCAGCTTGTTTCAGAAAAAGCGAATGAGGAGAAAGGGTGGGTGGGGCCAGGCAGGAGGACCAATCCACATTATGAGGGCATGTCAGGAGATCACAGCAGGAAAAGTGGATTTAAGTAGCtgggaaaagaaaatacaaagagaTGCACTGGCCATGGGAAGAGAGGGCGAATGGTCTGATGATGGGACGGAGACAGTGCTGATGGAACACAACACTGATGTTGCCATGGAGCTGAACAGTCCCACACGAGAACTTTACAAAGATGGAGTTCTCACATTAGGCTGTATagGGTTTCCTAAtgtaggaaagtcttcagtgtTGAATAGTTTGGTTGGTAGGAAGGTTGTGAGTGTGTCTCGAACTCCTGGTCACACAAAGTATTTCCAGACGTACTACCTCACCCCTACTGTTAAACTGTGTGACTGTCCTGGACTCGTCTTCCCCTCTAAAGTCAACAGACAACTACAGATTCTGGCTGGTATTTACCCAGTGTCCCAGCTGCAGGAGCCATACAGCTCGGTGGGATATCTGTGTGAGTGCACTCCTTTCCTGTCAGTACTAAAACTTACACACCCAGAACAGAGTGctgacacaccacacactaccAGCACACACGAGTGGACAGCCTGGGATGTATGTGAAGCGTGGGCAGAGAGAAGAGGCTATAAGACAGCAAAGGCAGCACGGAACGATGTTTATCGAGCCGCTAACAGCCTGCTGCGCTTGGCAACAGACGGGCGCTTATGTCTGTGCTTGCGGCCACCAGGATACACACAGAacaaagATAAATGGGAGTCCCACCCAGATTTGGCAGAAATCATCGCTCTACAGGGAAGAAGGCCTGAGGATGAAGAGAACGGAGACAGggatgaggaagatgaagagtCAAGCTCTGAGCCAGAGGAGGAAGACGACAGAGAcgcagatgatgatgaggatgccGATGGAGACGATGAAGATGAAAGTGTGAGGTCCGATAAAAAAGGCAAGGCCTACAGCATGAACATGTTTGGCCTGCTGGGAGAGAACGAGTGCGAGTGAGGGAGCAGCTCGATTTCAGCGCTCATTCTGTCATCTCAGTCGGTCACATTCTTTGTTTCTCAGAATCCTCTTGTCTGCATATTTAGAACTCAGTTTAAGTTGTTACTTATCATTTCTCAGTCAAGTACAAACGCTTTCATCACACTTGCAGAACTTACACTCCTCAATATGCCTGTTCCTGCTTGTGTAagcagctgagtgtgtgtgtacctctataccctctctcagCTTTGTTTCATGATagtaatttaaaattttcatttaatctCGTGTTTGAGAGTTTAGATTGAATGTAACTACAGTCGGCCAATTGTGCAGACTGTGTATTTGAGTACAATCGTTGATTGATCAAGAATCTGTGAGTTCACAGCTTTATTGCCAAAGGTTAGCAGAAGGTCACTAATTTCAATAAGAGAAAAGACAAATGGAAGCCTCAGTGCTGCAAGACCCTGCATGCAGCTTTAGGACAAATAAGCCAGGTGCATTTAAGGGAAGTAAGTAAATACAAAAGCCAGCCATGAAGTAAAGAGGTAACTAAGAGACAATGTGAAGTAGAGAACCACAGAAGTGAAAAGAGAGTGTAGTGGATATCTAAAGCACTTTTTAAATTAGGAAGAACTGTTCAGTATTTCTGAATAGATCTTACCAGACCAGGGGTGTGACTGACATATACAGTTACTGCCTGCTCAGGCTGTGGAGGAAAACATTGAGTCATGTCAGAGTTAGATAAATTGAATGTAAGTTGTGTTCTCAGATCCCGTTTTTGAAGACATGCATGCATCCTCCGCTGTCCTACAATGGCAGCAACATATTTCTAATGCTGTGCTGCCTTTCAAAGAACATCTCAAACTGTTTCCTTACAGTTACCTTCATAGCTGTTGAAGCTCTGCCTTCTAAATCACTGACTTATAAGATAGCATAGGTATCAAGGCTTCTGTTTTTGACACAGCTCAGGTTTTGAGCGATAATAAGGAATGTATTTGAAAGTACTTGTGGGTAATTTCTGCCTTTCTGAGTTCAATATAATTCCTACACTATGACATTCTATTGTTGAAGGTATTTCCTGGCATTGGTTTTGCGTTAGTGccatcagaatttttttttttcccttgataAAGAATCTTGATAATGGGACTAATATGATACATATTTGATTTACTGGTTGAATAAAATTTTGtagtatgcaaaaaaaatatatatataagcttgCAGATTATTAGCtgtacacataaaaaaaaaaa

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15956 lncRNA downstream 79384 23911079 ~ 23912280 (-) True G13438
TU15941 lncRNA downstream 175606 23814277 ~ 23816058 (-) True G13424
TU15915 lncRNA downstream 317519 23673787 ~ 23674145 (-) False dedd1
TU15881 lncRNA downstream 463724 23527690 ~ 23527940 (-) True G13369
TU15873 lncRNA downstream 485366 23506020 ~ 23506298 (-) True G13361
TU15974 lncRNA upstream 19947 24021530 ~ 24021918 (-) True G13452
TU15987 lncRNA upstream 40671 24042254 ~ 24042606 (-) True G13465
TU15989 lncRNA upstream 41861 24043444 ~ 24043657 (-) True G13467
TU15992 lncRNA upstream 46520 24048103 ~ 24049565 (-) True G13468
TU15993 lncRNA upstream 47396 24048979 ~ 24049565 (-) False G13468
XM_026940053.2 mRNA downstream 14124 23934744 ~ 23977540 (-) True ddr1
XM_026940058.2 mRNA downstream 73100 23913089 ~ 23918564 (-) True tubb5
XM_034307739.1 mRNA downstream 82543 23891489 ~ 23909121 (-) False mdc1
XM_034307734.1 mRNA downstream 82543 23891489 ~ 23909121 (-) False mdc1
XM_034307743.1 mRNA downstream 82637 23891489 ~ 23909027 (-) True mdc1
XM_026939896.2 mRNA upstream 893 24002476 ~ 24021059 (-) False znf384b
XM_026939894.2 mRNA upstream 893 24002476 ~ 24021059 (-) False znf384b
XM_026939898.2 mRNA upstream 893 24002476 ~ 24021057 (-) False znf384b
XM_026939897.2 mRNA upstream 893 24002476 ~ 24020663 (-) False znf384b
XM_026939895.2 mRNA upstream 893 24002476 ~ 24020663 (-) True znf384b
TU15196 other downstream 1083562 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1083562 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2716323 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 4167981 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 4244781 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 234709 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 389947 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 534277 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1399173 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1399173 25400756 ~ 25404306 (-) False G14258

Expression Profile