RNA id: XR_004578322.1


Basic Information

Item Value
RNA id XR_004578322.1
length 5251
RNA type misc_RNA
GC content 0.41
exon number 7
gene id si:dkey-92i15.4
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24391530 ~ 24404530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCAGGCAAGTTGGCATTGCAGATGAATAATagtaaaatagaaaaagaatgaGCACAAGACAAGAGGAGAGGAAGTATACTGAACATTTgctgtgattttctttaaagGACTTTGGATTATTGGAGTATCTGAAAAAGCCAGTTgcagaaagaggcagagagcCAAAAGATCAGCCAGTGAAACCTgcagaacacaacacaacattctgtagaagaaaaagaagcaaagaagCATACTCGGGCTGAAAAAAatttcctggaaaaaaaaacagaagaaagcttgtcctgggaaaaaaaacagaagaaaacaaagtgtCCTTACAAATGAACAGCTAACTTCCAACATGAGCAAATATAAACAATTCTGAGTACTAAGGACACAAAGGGAGCTGACTTTTTTGGTCTGTATTTGTTATATATGGTTTGTACTTTGCTggacattttattacttttaccCGAACATTACGGCACTGCTGAAAAGCCACACCTGCACCCTgacaaaaaatcttttttttgtttatggaTTACTTAAAAAGAATGCCATGTCGACACTTGGACACCTTTGATCACACTGTGCAGGTTGAATTACATAGCTGACAACCTACCCACATTCGGTATGGACATGCAAAGCCATTTATGTGacaaaaatatgaacatgaatTGAAGTACTAAAAAGACAATCACACTGTAATGCACGCACAGTTCCTCAGTTCCTCAATCCCTGTTGTAGAAAATGGATATCTCTGTTAGATCTACTCGTGTGCCTGAATACTCTGCCTATCGATCAGAATCAGTCCCAAGAGTTGGAAGTAGAGAATCTTCAAAATGTTCTGAAGAACAAAACCAAAGTCAGCCAGGCACAGCCCCAACACAGCCTCCTGTTAGGTTCAAAATCCGCTCTGCTAAAGAAAGACAGCAGTCGCTCACCCAAATCAGTAGTTTTAAGTGCGGGACATTTGAAAATGCAAGCAGAAGCATCAAAGATTGTACAGAAGAGATGCCCAGAGTCCACACCATTTCACCTACATCTCCAGATACTGATATGATTGACAAAATAAGACCTAGAGCTCTGAAACAGCTCAGCTTGACAAAGAAACCAGAACTGTCCATTGGCTCTGAGACAAGCAGTGCCACTCAAAAGAAGCCAGATTGTGTTGAGAGTCCCACCACTAAAGTGAGGGGAAGAACAGAGTGGAGACAAGAATATCTGTCAAACAGAAGTAAGAGCTTAGACTGGGGAGGATCAAAAAGTGAAGGAGGACAAAAGAATCAAACGGATGTTATCAGAAATACTAAGGATCTTGAAGGGAGAGCCATACGACGTTCTGAGAGTTTAGAGAGAAATGATGCATTCAATAGACCAAACTCAAGTGAACTGGCCCGCCCATTAAAGAAAATATCATTACAAATTCAACCATTCAAAGGAACTGGTCAAAGAAAGCAGGACAGCAATGGACTTATCTCCTCAGCAGTACCTGGAACATCACCTGTGAGAACGGTGGCTCTTGCCCAGTCTTTCCCATCCAGAGTAAACACAAATCAAATCCAGGACAggacagaggaaagaaaaagtcCCTGGCATTCTGGACATAGTGGTACCAAGCCAGATCAGGCAGAGCACTATCTCAGATCTCAAGTCACTGCATCAAAGGTCAATGAGATCACTGGGAACCACACAAGTCGTAATGTATTAGAAGATAATAGTGAAGTAAGTTCAGGCGTCTCACATGGAATCATAACCCCTGCCCCTTTTTTTGGTGTCAATGCTACTGATTCAAATTTAAATAGCAGTAAGCCCACTAACAGTTCATTGGATGGATGCTCatccttttcttctttcagtAAAGTGAAGACAGCGTCATATAAACCAGAAAAGTGTGGTACCTTCCCAAAAACACCCTTCAAAAAGGAGCAAATGAATTTTACTCCCTTGCCAGACACTTCATTTGTTTTCCCCAATGGAAAAGATAACTTGGTTACAATGTCAACATGGTCTAAAGAGAAACCCCAAGATTCAGTATCTTTGGTGACCAACAATAGTATATATGATGAGAGAAGACAGACTTGGCACTCTATAGGACTAGGAACTCATTCTTTAGGCAGAACAAGATACAGACATTTTACAGCTCCGATTTCATATTCAGCCTATGGTCTGAGCAATAGCAATAGTAACCAAATAAGCAccaagaaagaaatagagaggcAAGTAGAAAAAACAACTAGtaattcaaaacacacaaaagacatAGAGACAATTCCAGGAAAACAACCACATAGCTCACAGGAAGGAATAATTCCTCAGACCAAACCTCAATCATCCCAAAGTATGACAACAGACAGTAAAAAACATTATCATCAAAAACATGGGGTTGGTTTGGAGTTTGGCTCCACAGGAAATCCAAGCAAGAAGAGTGAGACCTTGTTAGAGAAAGTCCAAGAACCACCCTTGGATTGGGTGCGAAACACAATTCACAAATTTGAGGCTCTTGCTCTGCAAAGCCAGAGTTTATCACAGATTCAGCATCCCAGAAGGGCTTTGTCAGTTACAGAAAAGCCAAAAGTGGTGGCCAGTGTGAATAAGACATATTCAGATAGGTCATTAGGTATGAGGTGGGGTGACTGGAATAGAGAGTGCTTGAGAGAGAATCTTTTTAGTAAGAGTGATGTCAGCAACGAGGTAGTGAGTATGCATGATCTAAGTGGACCTGTACAGATCACAACACAAGATAAAGAAGGATCAACAGTGAAAACCCAAAGCAGAGGAACTAAAAGTCAGGAGCCTGGAGTTGTGCAGACTTTGAAACTACTGGATGAATTTCCATCTGACCAGAAGTATGAGGTTACTAAGAATAAGCACGTGGATGAGCCAGATTTCTCTAACGGCAGTAATCTTAAATCTTATCAAAAGCTTAAAAACATTGAATTAACTAAAGAAAAAGTTAAGAATTATCTCAGTTCTACAATGTCACACAACTCCAAAAAGTCCAGTGGGATCACTAATGTATCCCACTCTGATCTTAAGGACTTCTCTCCTAAGCCAGAGAACAAATTTTCAAAGTCTACAAAAGATAAAGCATTTCTAACATCAGAAAGCTCCCCCATGTTACCAAATTCAGATTCATCCATCACAGTAAAGTCAACACAGTTAACAGGCAACAGTGCTCCTTCTAAATCACCATCCAATCTCCTTAGTGACTCAGTAGTAATTCCTCCTATCCAAGACTTCTCTTCAGCTACAGGTGATCTCAGTAATCCCTACAACacaataaaagatgaaaaagtaGCTGCAAAAGTTATTAGTTGGATTATGGATAAAGCTGTTGATGATGAGAATGGTgaagatgatgacgatgatgaagaCAGCgagggaacagagagagaatatgaCTCTGACTCAGGAGAATCATCAGTAACCATCACAAGCAACATGAGCAGTAGGAGTTTTTCTATGAGcCTTGTAGAGCTACGCAGTCTGGGTGGGCTGGACCTTCCACCCTCAGATGGCAGTGGGTCAAAGGATGACGAGAACTGGATGTCCAAGCGTACAGTGTCCATGAGCTCAGACGTTTCTGCCCTGTCCTCTGTGACACTGCTGGACATGGACGAGCTGGACTGCTTACTGAATGATGTCAGGGGTTTGGAAGATGATGCCATAGAGAACTGTGAGGATGTGCATGTGGTTGTCCTACATAAGGAGGCAGGAAGTGGACTTGGTTTCACTGTGGCTGGAGGAGTGGATCAGAATAAACCTGTGACTgtTCACAAGGTGCTACGCAATGGCATAGCAGCCCAGGAGGGCTCCATCCATGTAGGTGACCAGGTGCTGTCTATTAATGGCACTTCTCTACATAACTCCACCCACAAGGAGGCGCTCTATACTATGAGAAAAGCAAGAGGGCGGCCCATGGCAGTGGTGGTCATCAGACGAGGTGATGTCACTGAAACAAGCTACAGTATCAAAGACAGTCCACAGAAAGCAGCTGTGAACCAGGCAGCAGAGTGCGAGTGACTTTGAATAAGTCCAGCTCTGACCTGGGCTTCAGTCTGGAGGGAGGAGTGGGCTCCAGCTTAGGAGACAAACCCCTCACTGTACAGAGGCTCTTCCAGGGTGGACCAGTTGGGAAGGTTTTTCCGGGAGATGAACTGCTGGAGGTTGAAGGTCAGAGGTTGGAGGGTTTGAGACGGCTTGAAGTCTGGCACCTGATCAAGAGATTGCCCTCTGGCCCTGTGGAGGTCTTACTGCAACGTCCTCACCAGCGATACTGACAGCATCTCCTTTGTAGCCACTTCAAATATGGACTTaagggctgtattcagatttgAGTTAAGTGTGCACAGTTATGAATTAATATCAGAATTGCACACActagtattcagacctcagaatTACCCTCAGACGTAGGCTCTACTTGGGCAGTGGGTGAGCATGGTTGCCAAAAACAAAGGCATGTCTCAGCTGGTCACTATTCTGACCTTAAATGTAAGTGAATTTTTGTTGCAAGATTTCCAGGGAAGAGCTGTATTTTAACCCACACCATAATCTCATGTCTGTTGCAACCACTATGTTTCTGACAATAATGTTTAAGCtaatgtaaatacacacaaaaagatGCTGAACTGCAGGCAGTTTCAACAGTCTGAATGGTCAGCTCAGAAAATCAAGCGAAGCACTTGCATAGCAGAAGTGTGAATATGGATAACTTTCTGTGTATACACTGACATAACTTTGGGGTTTTTGAAGTTGCTATCTCTACATAAAGCCCTAAGAAAATATATTAACTCTATAAGAGATTTGTAAGTAATGTtgttacacaattacacattgGTTTCTGGCTTATTTTTGAGTCCAATGTGTTGGATCGAATTCACTATTCTTAAAAGTATTTAGCAATTTTGGAATATTAAAAAGGTAATCATATTCTATGTAAGATTACTATGGCATGCTTTCAGGGGATGCACTAGAGGTTTATGCAACAATTAAGAGGAGATGCAAATAGTTTTCCTGTAAACTAGAACTAAGTACTAGTTTACAGTGTGGCCTAGGTCTTATGTCTTATGCttataaaatgcatatatttaactttcttcttcttaataataataataataataataataaactttattttatatagctttattttttactaaagGTTAAAATGAAATTGACTTTATATAATGACTATCATATCTGTTTTATGACAGGCCATTTTGACCTCATGAagagaattaataaataactatatTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16377 lncRNA downstream 126 24390511 ~ 24391404 (-) True G13783
TU16376 lncRNA downstream 3527 24387289 ~ 24388003 (-) True G13782
TU16340 lncRNA downstream 73110 24317682 ~ 24318420 (-) True G13748
TU16344 lncRNA downstream 121726 24266654 ~ 24269804 (-) True G13752
XR_004577826.1 lncRNA downstream 151488 24237211 ~ 24240042 (-) False LOC117596842
TU16374 lncRNA upstream 39891 24440646 ~ 24696017 (-) True G13780
TU16416 lncRNA upstream 151672 24552427 ~ 24555612 (-) False LOC113542209
TU16411 lncRNA upstream 172344 24573099 ~ 24578247 (-) False pbxip1b
TU16422 lncRNA upstream 213498 24614253 ~ 24619949 (-) True G13819
TU16439 lncRNA upstream 313234 24713989 ~ 24718852 (-) True G13834
XM_026940082.2 mRNA downstream 6307 24375921 ~ 24385223 (-) False aqp10a
XM_034305168.1 mRNA downstream 6307 24375921 ~ 24385223 (-) True aqp10a
XM_026940079.2 mRNA downstream 16743 24332619 ~ 24374787 (-) False atp8b2
XM_034310330.1 mRNA downstream 16743 24332619 ~ 24374787 (-) False atp8b2
XM_026940078.2 mRNA downstream 26149 24332619 ~ 24365381 (-) True atp8b2
XM_026939669.2 mRNA upstream 18726 24419481 ~ 24432966 (-) True tuft1a
XM_026939668.2 mRNA upstream 41632 24442387 ~ 24475208 (-) True LOC113542274
XM_026939725.2 mRNA upstream 132016 24532771 ~ 24534495 (-) True s100t
XM_026939726.2 mRNA upstream 135364 24536119 ~ 24546841 (-) False si:ch211-105c13.3
XM_026939727.2 mRNA upstream 146509 24547264 ~ 24550488 (-) True LOC113542308
TU16308 other downstream 151451 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 1483428 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1483428 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 3116189 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 4567847 19816477 ~ 19823683 (-) True G10832
TU16407 other upstream 135105 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1000001 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1000001 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 1001190 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 1146279 25547034 ~ 25589703 (-) False cadm4