RNA id: XM_026940295.2


Basic Information

Item Value
RNA id XM_026940295.2
length 2114
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch73-86n18.1
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 24064724 ~ 24069667 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTATCCATGTGTCTGCACATGGCTCACACATGGAGAACGTGACTAAGTGGATAAAAACTGGCAGGACATTGTGAGGGGGAGtaaaaggaaagaggaaaaacgTAGAGAAGCCCTGCCTTCTCAAAGCATTAGCTTATTTAAACTTGCAAAGGAATTTGCTATTTGAATCAAAAACCTGATAACAGGAGGACACAGTGATTGTAAAGGATTATATAATTGCATTTATACTGTGATCGTGTTTAAGAACTTCAGAGAACTAGGCATTTAATCATGGAGGAGAACTACAGCAGCCTACAGGAGTTCACAGAGGATAGCCACTCAGCCACAGGAAACAAACCTATACTCTACACATCACACAACGGACAAGCTGGTACTATTAAAAGAGTGGAGTGGATGAGGAGACAGATGGTGATTTTCCTGATCATCACGCTGCTCATTTCGTTATGTGTTAACATAGCACTGGCTGTTTTCTTGGTTAAAAGGAACCCCAGCAGTCCCCCCAGCGTGGTGACTACACAAAGTCCACTCTCTGAGGAAGGCATTCAGTCTCTGCAACAGTTGTCCCTGCAGGAGCGCTTCTCCCGCCTCTGCGCTGACTACACCAGCCTCGGAAAGACCTGTTCAACAGAGGTGAAGCAGTGCATGCCGTGTCCTGATGGCTGGAGACATATAGAAGAGAAATGCTACTTCTTTAGCGATGACAAACTAGACTGGATCAGGAGCAAGGAGAGCTGTGCATCTATGAATAGCTATCTAACAATACTTCATACGCATGAGCAACATcttgcTCTGGAGAAAATAGCCCGCAGTTTGAGTGGCTTCGACTACTATTACTGGATCGGCCTGTCAGACATTGAAGAGGAAGGCGTGTGGAAATGGGTGGACAAAACACTAGTCAATAAAACGTACTGGAATGAATGGGACGGAGAGCCCAATAATCACCAGTCTGGAGGGCTTCATGGTGAAGACTGTGCCGTGCTGAATTCTCACTCGAAATCCTGGTTTGATGTGCCTTGTGACCACATCTACAAACGCATCTGTGAGATGGATGCCGTCACTGTAAACTGATTCACAGAGCCATTAAAGATAGAAAATGAAATAGTACTCTCaaaaacactgaatttttttttttaatatgaaaaaacaGTGTTGTGCTGCGTATACTTCTGAAAGTGTTCTTTTGTACCTTTGTGCTTATCCTCTAAAAATGAAGCGATTTGACAGAGTTTCAGTTCTTCTGTAAATAAAGATTGCAACACTGGCATGAGGAGACTTTGGACGGATTTGTTTGCAGCGTTGATGCCAGAAGTGCTAGATCAGCTTTTGGGTTGATACAGAcaacatgagaaaaaaacaacactgcctgatttgtgtgttttctaaCAGGGTTTTGCTTCATACTGCTTTCAGACTCTGACCTctgtactagcatgaggatgtttttgatggagactataaagctcttctgtaagtcactGGATAAAGACATCTGCTAAATCCTGGAAATGTAAATCCCTTTTGCAGTGTCCAAgaatctttttgttttgttttgttttgttttgttggatTGGATTTGTTATCCCTGTCTTTGCCATAATCATAATTCCAGATTTAGAATACAGTACAGAGTACTGTGAACattttgtacaaaaataaataaaatcggCTAGCTAATGGCCTACCTGTAAGTATTTCCGCAGATTGGATGTTGAACTGTAAAATGCCGACATCTCCACAGGTTTTGACTCGCACaatttgcagatcattatcatgttttttcctttgaaGCTAAAACTGATAAATTGGGCCGAGGATGCTCATCTgcctccactgtctcagacatggCTACAGCTGACTAAGCATTTGCTGCCTGACGTGTGGACTTTCTTGTTTTGATTGGGTCTTgaaattttagtatttttattatttttttatttacccaTACTGTCTTTTAATTGGCATACAGTCTTATAGGGTTAAACtagtgacatactgtatatacagtcattgagttaaatgcatgtaaatgtactcattatcaaaaataaatgtagcaaagtttaatattttattggaaaaaatCTCAAGTAAAAGTACCACTGCGactctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15994 lncRNA downstream 15064 24048979 ~ 24049660 (-) False G13468
TU15992 lncRNA downstream 15159 24048103 ~ 24049565 (-) True G13468
TU15993 lncRNA downstream 15159 24048979 ~ 24049565 (-) False G13468
TU15989 lncRNA downstream 21067 24043444 ~ 24043657 (-) True G13467
TU15987 lncRNA downstream 22118 24042254 ~ 24042606 (-) True G13465
TU16259 lncRNA upstream 47323 24116990 ~ 24120764 (-) True G13693
TU16274 lncRNA upstream 73175 24142842 ~ 24149234 (-) False LOC113542286
TU16276 lncRNA upstream 82038 24151705 ~ 24152851 (-) True G13703
XR_004577828.1 lncRNA upstream 119088 24188755 ~ 24198379 (-) False LOC113542360
XR_004577827.1 lncRNA upstream 119088 24188755 ~ 24198379 (-) True LOC113542360
XM_026940283.2 mRNA downstream 1517 24050406 ~ 24063207 (-) True cops7a
XM_026939896.2 mRNA downstream 43665 24002476 ~ 24021059 (-) False znf384b
XM_026939894.2 mRNA downstream 43665 24002476 ~ 24021059 (-) False znf384b
XM_026939898.2 mRNA downstream 43667 24002476 ~ 24021057 (-) False znf384b
XM_026939897.2 mRNA downstream 44061 24002476 ~ 24020663 (-) False znf384b
XM_026940006.2 mRNA upstream 976 24070643 ~ 24075271 (-) True trim108
XM_026940005.2 mRNA upstream 13183 24082850 ~ 24103169 (-) True setdb1b
XM_034314232.1 mRNA upstream 51197 24120864 ~ 24139160 (-) True otoa
XM_034314187.1 mRNA upstream 53322 24122989 ~ 24139160 (-) False otoa
XM_034314143.1 mRNA upstream 53322 24122989 ~ 24139160 (-) False otoa
TU15196 other downstream 1156622 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other downstream 1156622 22901351 ~ 22908102 (-) True zgc:92606
XR_004578404.1 other downstream 2789383 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 4241041 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 4317841 19746812 ~ 19746883 (-) False trnaq-cug_9
TU16308 other upstream 166625 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 321863 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 466193 24535860 ~ 24546837 (-) True si:ch211-105c13.3
TU16925 other upstream 1331089 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 1331089 25400756 ~ 25404306 (-) False G14258

Expression Profile