RNA id: XM_034307269.1


Basic Information

Item Value
RNA id XM_034307269.1
length 3951
RNA type mRNA
GC content 0.46
exon number 13
gene id trim46a
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25035405 ~ 25052980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATGCTCTACAGTGAGTGAACTCATTTCATCATCGTGGACGCCTGTTTTAGACCCTTTTCTCTTTATACAGAGGCAGCATTGAGGCCACTTAAATATACAGCCATCAGAAATGGAAAGAGTGAAAAGGGACTGCGTGATGGcattaaacatttaatggGATCATTTTCTGCACCTTGGCTCATTCGCAGACATGGCAGACGCAGAACTGCAGACTTTCACGTCTATAATGGACGCGCTGGTGCGCATCAGTtCCAATATGAAGAGTATGGAGCGGGAGCTCCGCTGTCCGGTGTGTGAGGAGATGATGAAGCAGCCGATTGTGTTGCCATgcctgcacagtgtgtgtgtgttgtgtgcagcAGAGGTGTTGGTGCAGAGAGGTTACCCTCCTCCTGAACTCCCGCAGGAGCCCAACACACCCACCTCAAGCCCCAGCACCCGCTCACCACGACACGCTCGCCGACCACCACCCAAAACTGACCGCCTTGAGCGTGTGCTCAaaacagTATGTGGCACCTATCCGGGCCGGAGACGGAAAGACACAATTCCTCTGAATATGTTGTTTCCATGTCCCACTTGTTGCCGGGACGTAGAGCTGGGAGAGCGAGGCCTTGCCGACTGCCTACGCAATCTCACACTGGAGCGTATAATTGAGaggtacagacagacagtgagtcTAGGCAGCATGGCAGTGATGTGTCAGTTCTGCAAGCCCCCTCAAGCACTGGAGGCCACTAAAGGCTGCGCTGACTGCCGGGCCAATTTCTGTAACGAGTGTTTTAAGTTGTACCACCCCTGGGGTACCCCACGTGCCCAACATGAGCACATTCTGCCCACACACAGTTTCAGGCCCAAGctgctggtgtgtgttgagCACGAGCAGGAGCGGATGCAGTTCTACTGTCGTTCGTGTCAGCGTCTGTTGTGTGCACTCTGTAAGCTGCGTCGTGTTCACAACGGGCACAAGGTCATGCCCATAGCACAAGCCTACCAGACTTTAAAGGATAAAATTACTAAGCAGATGAACTACGTTCTGGCTCATCAAGAGAGGGTGCAGGCCCAAATCACTCAAGTGGAGAGTGCCATCGCTCAGACAGAGGTGAACAGTGCTGTTGCTAAAGAAAAgctgaatcagtgtgtgaacaATATGCGTGAAGAGCTGGCTGATCGGCAGTGTGCTCTGATCAAAACTCTGGAGGAGACTCGTGTTCAAAAATCGGAAGCTCTAAACACACAACTTTCAGAGAAACAGAGTCTGCTGGACAATGCAGGGCTCGTCATGTACACGCAGGAGCTACTGAAAGAAAACGATCAGCCATGCTTCGTGCAGGCCGCCAGAGTCACCCACAACCGGTTGGTTACAGCCATAGAGAACCTGCAGCGCTTCTCCCTCTCTGCAGATCCCTCATTTCGCCGTTTCCATGTGGACATCTCCAGAGAGCTCAAGCTACTCAGCAGCATGAATTTCATACAAGCTCCACTGGCTCCTGTAATCGACACCCAAAAGACTTTGGCCTATGATCAGCTGTACCTGTGCTGGCGCCTCCCACAGGACTCTGCTCCCGCCTGGCACTACTCCGTGGAGTATCAGAGGAAAGATGGCAGAGATGGACCTTTGTGGGGCGGGGTCAAATCTGAAGGCTCTGGAGGCCCCAACAGTCCATGGCAGCGCATGGATGAGGTGGGCGGGACTAGTGCAGTGATTGACAGACTGGAGATGGACAGCGTGTATGTGCTTAGAGTGAGAGGCTGCAACAAGGCGGGTTTTGGGGAGTACAGCGAGGAAGTGTATCTACACACACCGCCTGCACAAGtgcTGTCATTTTGTCTGGACTCTCGCTGGGGACTCCATGCTGAGCGTGTGGCACTGGGTAAGGGGCAGACGTATGCCCGTAGCGTGCCTGGTCTCACTCTCCTGCAGGCCGCCGACCGCGCCCTCACTTCCTTTcatctgacctctgacctcctGGTGGCGGATGTGTCAATCACCCAGGGTCGTCACTACTGGGCATGCTCAGTGGAGCCTGGTTCATACTTAGTCAAGgttggtGTTGGTCTAGAGACAAAGCTTCAAGAATGGTTTCACTTACCACAGGACATGGCAAGTCCCCGATATGATCCTGATAGTGGGCATGACAGTGGAGCAGAGGATGCCCAGGACTGTCCACCTCCATTCTGCTTCCTCACCATGGGCATGGGTAAGATTCTCATGCCCAAGTCAGGGGCATCTAATGGCATGTCTGGCCCTCTCACTGCCCCTCTGCCCCCACGCCTTGGCGTATGTCTGGACTTTGATAAAGGATGCATTACTTTCTACGATGCCCACTCGCTGCGAGTGCTGTGGGACGGGACTGTTGATTGCTCCGCCCCTGTTTGCCCAGCCTTTTGCTTCATTGGTGGAGGGGCACTGCAGCTGCAGGAGCTAATAGCCAATCACAGCACGGAGCAAGCCCCGCCCAGGAGAGTCACCATTCAATCACATGCAACACATCTGAGTAACTGAAGCCATAAAATGTTCTACAGGAAACACGTCACTGTCAAGCACCTTTAAATGTGGTCTTTTGTtagtttttataatttatttatttggtatttacaatttatgttcaatttttttattttggtttatgcCCTACAGTCAGGGCTTTACATTAAGAGTTGCTCCTGCATTATGCCTAGAAACTGCAGCATGCAGATGATCATGATTTCATGATGCTGCCCTTTATGCTAAAAATAAAGTATGTCCAGTCTGGTGCATGAACTCACCCATAGGCATAAATCACGAATGATGCATTTCTGTTGAATGATGGGAATGATGATTTATAAgctatttttacacatttagcCTGTGAAGCACCTAAAATGGATATGTTAATAATTTGTACAGGCTTTGACTGATATCAATGTTTGCCTTTTATAGGACTGTATAGTTGCCACATTTAGGTCTGTCTCCATTTGTTTAGATCAAGTCTAAATTTAGTTTTGGTGTCATAGTCATGAGAGTCTCGTGCCACTGTTTTGTGTGGAACACAGTTAGAGCATCGAATACCTGTCGAAAGCTGTGCCCCAGTTTGCCCTGCGTTTTGCTTCATTGGTAGAGGGCTGATCACAGCAGGCCCAAACCAGGAGAGTCACCATCCAGTCACATGCTACATGTCTCTAACTGAAGCCATTAATGTTTGTAGTACATGTGTGTTCTAGATGTAACATTTATGTCAGAATCATCTTGGTATATGGCAATTTCTGAAAATGATGTCACTCAAATTATCGTATTTTTAAGAATATGTGGcctaaatgtttaatttcacaaCAAAGCTATTTACTGTGATCTGTCAGCAGTACAATatgaaaaagaacaattttaacaaattttaatGTAACATCACAATATTACAGTTGTTAGTATATCACAATGTCATGTCTcagataaatatacagtatacaaagtaGAATACAGTATTTAATGACTAAATATGTATGTTTATTACTGACACTGATTTTAGGAAAGCATGTTAAAAATAACTTCCATAAAAtgcaaaagtatttttaaaacagaacagaaatccATGTCTATGTTTAAATATCCAAAATGATCAATATCAGTTCCGTGTTTCTGCTTATGGAAATACCctaaaatgaataactgaaatGCAATGCTGGTGTTTACTCAGGCCTTTAAAGTCACAACTAAATGTGAAACTATTggaaaaagttgtttttttattttattttttttattatactacagaatttttttttcagcagctcTGTTCCAGTTGCAAAGTATATtacattctaatacattatcctttcagtagtaacagctcattcccaGGAACGTGTGTTGTAGACAGTtcaaaaagtgtgtaattgctgatatgctgaagtgtcagcactttgtaacagaggtaaagctgtaacttttttttccctgacacgggaaagtct

Function

GO: NA

KEGG:

id description
K12022 TRIM46; tripartite motif-containing protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16439 lncRNA downstream 316553 24713989 ~ 24718852 (-) True G13834
TU16374 lncRNA downstream 339388 24440646 ~ 24696017 (-) True G13780
TU16983 lncRNA upstream 10673 25063468 ~ 25065486 (-) True G14303
TU16984 lncRNA upstream 10673 25063468 ~ 25065486 (-) False G14303
TU16985 lncRNA upstream 10673 25063468 ~ 25065486 (-) False G14303
TU17001 lncRNA upstream 46607 25099402 ~ 25101229 (-) False G14315
TU17003 lncRNA upstream 46607 25099402 ~ 25101229 (-) True G14315
XM_026944847.2 mRNA downstream 227476 24770276 ~ 24807929 (-) False si:dkey-246i14.3
XM_026944846.2 mRNA downstream 227476 24770276 ~ 24807929 (-) False si:dkey-246i14.3
XM_026944844.2 mRNA downstream 227476 24770276 ~ 24807929 (-) True si:dkey-246i14.3
XM_026939921.2 mRNA downstream 436964 24584953 ~ 24598441 (-) False shc1
XM_026944856.2 mRNA upstream 209307 25262102 ~ 25266771 (-) True rps27.2
XM_034305958.1 mRNA upstream 265491 25318286 ~ 25333708 (-) False osgin2
XM_026944718.2 mRNA upstream 265491 25318286 ~ 25333708 (-) True osgin2
XM_034305963.1 mRNA upstream 265491 25318286 ~ 25333100 (-) False osgin2
XM_034305955.1 mRNA upstream 265491 25318286 ~ 25333099 (-) False osgin2
TU16407 other downstream 488568 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 634650 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 795326 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2127303 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 347961 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 347961 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 349150 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 494239 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 494262 25547057 ~ 25589703 (-) False cadm4

Expression Profile