RNA id: XM_034305958.1


Basic Information

Item Value
RNA id XM_034305958.1
length 3567
RNA type mRNA
GC content 0.44
exon number 5
gene id osgin2
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 25318286 ~ 25333708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACATCAGAGCTCTCGTGCGAAACCGGCACGCTGTCTCTCTGCGCTCGTTCATCGCTGTGTGagatgctgagtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgaagacgaCGCGTCAGATTCTCGAACCGGTCATCTCTGACCCGAACTGCTTTGCGTCTCGTGACAAAGCAGGCAGCGAACCCGCGAATCGAGAGCATCCGTGTGATTAACGCTGCATGCTCTCGCGCACTGTTCGTATCCTCCCACCGGCGTCGCGCATTATTTACGCTGCCCACCGCGCTCGCGCTCGCGACTCTTCGCACACAAGAGCATCGGGAGCCTTTATTCGCTTGGAGTGCCAGCTCAGGCTGTAGCCATGCCTTTTCTGGATGAAAGCTCTGTACTCAGAGACTGCCCTCCAACTGTGCCAGTTATTATCATTGGATCTGGAATACCTGTGTGAGGGTTTAGAGGGTCGTTCAGGCAACCCAGTGGCCGTACTCTTCGATACACTACTTCACCCAAATGCTGACTTGGGCTTCGAGATTCCTTCAGTACTTCAGTGGAAGCTGGAGAAGCAACACCACATCCCCCATCTAGTACTAGGCAAGGGCACACCAGGGGGAGCCTGGCATGCAATGGAAGGATCTATTCTCACCATTAGTCTGGGCATTTGGATGGAGCTGCCAGGGGTCAACTACAGGGACGTTAGCTCTGAAAAAAGGAGGAGTGTGACCAATGACCGGGCCACTCCAGACGAGCTCTCCTCTTACTATAAGAATTATGTAAATATCATGGGCCTCCAGAAGAACTTTAAAGACAACACCTATGTCACTTCCATTCAAAAACTCCACCGTGATCAGGACATTAGCCTTGAAAAAGAACATGGCAATGAAAATGGTCAGaagaacagaatagaaaatcGGTTTGACCACTGCAGtcaaaatgaaacagaaaacagtaACAACGGAAGGGACAACGGGTTTTGTAATGGTTTCAAAAATGGAACAGAAAATGGAAAAGATAaaacaggagaggaggagaacaGGAAGAAGAGGGACATGGAGGGCATTAGAGACAACAGGATTCCTCAGGGGTTTTCACAGGGACTATGGGAGGTCAGGGGTTACCAGCAGCTACAGGGCGACACCCATATTCCTTTCAGCCTGTTTGCTGAAAACGTTGTCTTAGCAACTGGGGCATCTGATTCGCCAGCTCGCTTAGGTGTGGAAGGTGAAGATTTTCCTTACGTGTTCCACAGCGTGCGTGACCTTGGCCTAGCTGTCAACCACCATGAGAACTTGGGCCCTGCTTCTGACCCGGTCCTGGTGGTTGGAGCAGGACTTACTGCAGCTGATGCTGTGCTGTGTGCCTACAACAACAGCATTCCTGTGCTGCATGCCTTCCGTAAACAAACCGATGATCCCAGTCTGATCTTCAAACAACTACCGAAAACGCTATACCCTGAATATCACAGGGTCTATCACATGATGTGTTCTCAGACCTACCCGACATGCCCCATTGCCAACCGTGGTGCCAACACTGCAATTCATCATGCTTCCACAGAACTGTACCCAGACTACACCAGCTTCCCAGAGCACTGCGTGCATTCTTTTCAGCCTGACATGCACTGCATACTAAGGGGATCAAGTGGTGTTCTGAGAGCCTTCAAAGTCTCGATGGTGCTGGTTCTGATTGGAACCTATCCTAGTCTGGATTTCTTGAAGGACCATGGTCGGTACCTGGGTTTGGATCCCAGCAGGCCCATCTCCTGTAGGCACAACCCAGTGGACATAAACCCTTACACATTTGAATGCAGTGCTGAGCCAGGCCTTTTTGCCATGGGTCCCCTGGTTGGGGACAATTTTGTGCGTTTCCTGAAGGGAGGCGCTCTGGGCATTGCAAGCTGCCTGCGCAAGAGACTGAAACAgatgaagaagaaagggaaactGATTGCTGATGAGGGTGATAGTAGAGGAGGAGGGGGATTTGTCTGAAGTCTGTCTAATAGTTTGTATAAAGAAAGTggcaaattatttttacaattaatGGAGTGAgtacatatatttttaactaTACAGCtttcttaacatttttaaaataggtAAAATGCATATGACTGTAGGATATAggagaatataaaaaatgaacCATGACTGCTGTCCTACAGAAACCGTAACAAAGGTATTTGTTATcatgtgtggaataatgtgccaaatttaatcatttttttagaTTACTCAGGCTGATGTTGCAGGATGTCATGATGTTGCACATACTCTAAActattttgtttacttgttaTTACATTCTTTAAGACACCCATCACAGTTAAAGAGCCCATAACTGCAATGAAACAGAGCAGGCAgccagatatgaagctcatgggacaaagaaaggccattAACAAGGGAGAATACTGGGTGTTCATGCAGCACTACATGTTTACAGCATTCATGCGCTCATAATTTGTAACTGCTTTATACTTAGTGTTACTGTgatttaaatgactaatttttGGAAACAGAACCAATTAAGTTTATTCAAAAATATCAAAAGCacatacaaatgaaaataactgTGGGGAAGATCAAGATTGTTCACACTTTCGATAGGAGAGGGCGGGACTGGTCAAGATTGTCTGAAGTGGATTAAAAATGGTCCTGTGCACACCTCTAGTTTAACCCAAGTTGACTCAATAATAGACTTAAATATTAACTATCTGGTTCcacatatgtaaaatatgtcCCCATGTGTATTTAGAGTGCTTGGGTAATAAGGTCTTGATACAGTATGATCCTTTAGACTGAGCAACCAATGGATACCTATGGGTTTTTAGGTGCTTATATAAAATTTTCCAAAGTAGAAGTTAGGCCTTAGCCTCTGGAAAAGGCTATCAACAGTAGTTGTTCCATATGATTTGCTTCCCATATAAAGTCTTATTGTTGATGCCACTAATGGTTATGCCTGACCAAATCAATTACTTGTTAATTCTGATCCAACCCCATCAAGTCAGAAAAACTTTCGGCCTCATGTGTATCTGTTTTGTTATTTAGAATTTTAACAAAGCTGTGAATTATggaataattaattatatttgatcttactgatttttttaccctactttttaaaaacttttttcctATACTCTAAGTCAGGCTGTGTGCCTATGGCCAAAGGGCTGGTAAGGCTATAGGTTTTTACTCCATCCAAGCAGGAATGTCATCCCGATCCCAACTATTTAATCATGGTCTTGGTCTCTTGGAGACTCCTATTTGaatggaatgaaagcctgcaacCACACCTGTcctttgcagataagattgaAGAGCCCTGCTATAAGTCACAACATCATTAATCTTCCTATGCATGTCCTTACAACAGGTAAGGTATTTAGAATAATAGCTAAAGAATATGTAGATGCATTTGAGTTGCCAAAACCAAAATAAGGAAATAAGTTGTGTTCCAAACTTACCTGAATTTGTGTGAATGCTCAAActtgtacaataaaaaaatgttttgatacatgttttgtaaacatcattttattagggataaataaaacttttcaaaTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17053 lncRNA downstream 51590 25262040 ~ 25266696 (-) False rps27.2
TU17022 lncRNA downstream 170023 25145841 ~ 25148263 (-) True G14333
TU17001 lncRNA downstream 217057 25099402 ~ 25101229 (-) False G14315
TU17003 lncRNA downstream 217057 25099402 ~ 25101229 (-) True G14315
TU16984 lncRNA downstream 252800 25063468 ~ 25065486 (-) False G14303
TU17138 lncRNA upstream 16711 25350419 ~ 25377045 (-) False G14435
TU17141 lncRNA upstream 16711 25350419 ~ 25360795 (-) False G14435
TU17143 lncRNA upstream 16711 25350419 ~ 25355128 (-) False G14435
TU17144 lncRNA upstream 16711 25350419 ~ 25360795 (-) False G14435
TU17145 lncRNA upstream 16711 25350419 ~ 25377045 (-) False G14435
XM_026944856.2 mRNA downstream 51515 25262102 ~ 25266771 (-) True rps27.2
XM_026944707.2 mRNA downstream 265306 25035405 ~ 25052980 (-) False trim46a
XM_026944706.2 mRNA downstream 265491 25035405 ~ 25052795 (-) False trim46a
XM_034307269.1 mRNA downstream 265491 25035405 ~ 25052795 (-) True trim46a
XM_026944708.2 mRNA downstream 265491 25039182 ~ 25052795 (-) False trim46a
XM_026944882.2 mRNA upstream 1893 25335601 ~ 25336609 (-) True LOC113545493
XM_026944769.2 mRNA upstream 104159 25437867 ~ 25487424 (-) True bcam
XM_026944770.2 mRNA upstream 104159 25437867 ~ 25487423 (-) False bcam
XM_026944771.2 mRNA upstream 110269 25443977 ~ 25487425 (-) False bcam
XM_026944870.2 mRNA upstream 187781 25521489 ~ 25527931 (-) False rps19
TU16407 other downstream 771449 24535860 ~ 24546837 (-) True si:ch211-105c13.3
XR_004578322.1 other downstream 917531 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16308 other downstream 1078207 24236292 ~ 24240079 (-) True LOC117596842
TU15196 other downstream 2410184 22901351 ~ 22908102 (-) False zgc:92606
TU16925 other upstream 67048 25400756 ~ 25404306 (-) False G14258
TU16933 other upstream 67048 25400756 ~ 25404306 (-) False G14258
TU16922 other upstream 68237 25401945 ~ 25404306 (-) False G14258
XR_004578410.1 other upstream 213326 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other upstream 213349 25547057 ~ 25589703 (-) False cadm4

Expression Profile