RNA id: XM_034307294.1


Basic Information

Item Value
RNA id XM_034307294.1
length 2869
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113545420
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 26466811 ~ 26512794 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTGTATAGACAAGTTGCTAGCATTATTACAGCGCTATTCGTACAGATTGTGAGCTTTAAGGGGACaaacagttttaattttaatgtttaaaataaagtatattttgtCACCAGTTTTCGCTAAAATAGTATTAAtagtttaaatataataattaatagtattaataCTAGTGTGCAGaatgaCTGGATACAGTGAACAGTGTCTGTTCTTCATGCCTGTACCGGACCTGAAGAAACTCTACAgtgtttttctgtcatttcacaGTTTTTCATCTCAAGCAGACGAAGGAGAGCTGAGAAACAGGCAGATGAAGACCTGCAGaGAGCTTTTGCATTTGCATTCCGATCTTATTGCGTCCCCTGTGTTGGGCTCTTACGGTGGGATCAGAGTCATAATGGCTATCGGTTCTCCTCAGAGGGTTCTGCCTAGCATCCTGCAGATGTGTCTATCTTACTCCCTCACTGCTCGACTATCCCCGAACTGGAACAGAGCAGGACAGTATTTAATCGCAGGAAAGGATTTCCTGTCTGATGCTAGCAAACGCATTGCTGTTGTCATGGAGCTGAGTGTGAATGAGACTGAACTCTGTGTCAGCATGGAGGCCAGCACTATAAGACTTCCTCCTGTAACACTGAAAGACTTCGATCTTCCAGCTCTTGTGATGGAAAGATTTCTGAATAACAGAGAGACAGTTCTCCACACCAAAACACCAAATAACTGGTGCTACATTCTCCCAAGCATGAAGAAGGGCCAGGTCATCAGCATCAGTCGCACACTGCCACCAGAGTGTCCTTTCCAGACTTACGCTGAGCTTCAGAATCACTGGAACAGCAtgtATGGCTACTATCTGCCTCCACTGAATGAGGATGAGGTGGTGTACTGCAGTATGTATTTTAAACCTCTTGGTGAGAGGCTTTTCACATATCCATTGTGTTGTATTCGCATTCAGCCAGTACAGTGTTTTCCCCGAGTGAACCTGCAGGGGGCACTCACAGCCTTTATATCAGATGTCAGAAGCCTCATGGAGAATGTTTGTGGCTTTACAGCCCAAATGACCAGCAAACCCTGCTACCATACTAACAATCTGAGCAGACCTGATTTACAGGACTCTGGGACCTTACCTGCTAACCTGACCTCCAAGAGCTCCAGCAGACTCGTGCTGACCCAGCTCCCTAATGTCTTCCCTCCAGAGAGGGTGCCTCTTACACAGTTAGCATCTTCTCCGTGGCCCCATGGTCTGAGCAGCATCAGACAGCCAGCTAAAACCAATGGACACGGGAATCCTCAAATCCCCAACCACATTTTTCAGTCATCTCATTGCCATGGCACTGAGACATGCCAGTTCCCATCATCGTTCACCTCCTTCCCATCATTCTCCTCTTCCTCGTCTGTCTCTGCTAATCACCTCTTGCTTAGCAACACTCAGCCTGCTACACAGAGACCCAAACTGGTGCCTATTTTCACAAACAAGTCACTGAGCCGTCATGTTAACATCACAAAGATCTTGGCtgagaaaaaacaacagaaacaagaAGAAGCACAGTGTGCTTCTAGAGCAGCAGTTAAAAGACCCTCCTGTTCTCCTTTATCCTCTACATCATCACTTCCTAGAGTGTCTCTGCCATTTTTTAAGGACCATAAAAGAGACCACAATGTCTGCGCTACCACACCAGCACAACCACTCTTTCAAACACAGCCTGCAACCATGACTGAGATCAAAAGAGAGGGCGAAGCATTTGAGTCACACCCAAAGAAAGCCAAAGTCAACATACAGGAAGTGGATGTGGTGAAGTATGCAAGAAGCAATCAGcTGGCAAAGATCAACTCAGCAACTCTGCAGGCCTGGCTGAAAGGTCAAGGGATCACTGTGCGTTCAAAGGACAAGAAGGAGGACCTGATGTCAAAGGTCATGCAGTGCCTGAGTGAACCATGAGGCAGGGAGTCGCCATCCAGACAAAGCCTGCAGGTTTAGAGTTCTCTCTCAGGTAATCCACACCAGAGCAGAAGTCTAGCCTGTAGAGCTTTTCCCTTATGGCACTCACACTGAGCATGCCCATGAGCTGCCCATGAGCTGTGTTGtgctttagcttttttttttctgctctgcCAAGTTCAGCATGATGTTACGTTAGGCTTTGTGCAGATACAACTAGATCTTACAGACTGACCAGTGGTCTAATTtaagaatatataaatgtagatTTCTCTCTGCAGTGTTTTACAGTGTCTGTTTGaacttttcttttgcttttcaaTTTGGTTACTCTGTTGTACAGTTGTACACTTAAATATAAATCAAGGCCATCAGTTTTGGCCAGATTGATATTATACTATATTGTGATATGAAAAATCTAAATACAAATATGTTTCCTGTTCTGTGCCGTTTTCATCACTGGTTTCTTCCTTTTTGGTTTAGTGATCATCTTTAAATGCATTCAGTACATTTAATGAAATCTAATTTAGCTTTGTACCATCACTAAGATCCAGCAAGAAGTTTGATATCCAAATGCACACAGAGAATTTCAGATGACTGCGGGTGCTGCGTGCTGCCACACCTCCAAAGCGTTTACTGCAAGCGTGTACAGAAAGCTCTGATGGGTGCTCGGCTTGCGTCGACTCTAATGATACACACAATGACAGAGAGCCGAGCACCAGAGGAGTGTGACTGAAATGGAAATTGGCACAAGTCACTTTGATGGCTAATGAAGGGAGCTTTCAGAAAGTCCAACATCAGCAAGCCTTTTTAACACTTCTTACTTACCAAGGGCTAATGACTGGTACAAATCTTTTTCAGCGAGATACGCAGTGAAAAGAGTTCCTGCAAAGGTTACACTAGTTTTTCATACAGTTTTCATGCAGTCCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578627.1 lncRNA downstream 38745 26448656 ~ 26452315 (-) True LOC117597861
TU17986 lncRNA downstream 44120 26446652 ~ 26446940 (-) True G15174
TU17971 lncRNA downstream 83931 26403523 ~ 26407129 (-) True G15163
TU17916 lncRNA downstream 176733 26310023 ~ 26314327 (-) True G15111
TU17816 lncRNA downstream 381227 26104667 ~ 26109833 (-) True G15012
TU18132 lncRNA upstream 221065 26733362 ~ 26782469 (-) True G15313
TU18162 lncRNA upstream 241444 26753741 ~ 26754050 (-) False f13a1a.1
TU18178 lncRNA upstream 310938 26823235 ~ 26836478 (-) True LOC117598133
XR_004578839.1 lncRNA upstream 311745 26824042 ~ 26836478 (-) False LOC117598133
TU18263 lncRNA upstream 608889 27121186 ~ 27121502 (-) True G15438
XM_034308008.1 mRNA downstream 44959 26425658 ~ 26446101 (-) False cul2
XM_034308010.1 mRNA downstream 44959 26425658 ~ 26446101 (-) True cul2
XM_034308013.1 mRNA downstream 46813 26425384 ~ 26444247 (-) False cul2
XM_026944876.2 mRNA downstream 72021 26038040 ~ 26419039 (-) True pard3aa
XM_034304296.1 mRNA upstream 18462 26530759 ~ 26576298 (-) True LOC113545413
XM_026944830.2 mRNA upstream 222914 26735211 ~ 26740685 (-) True nrn1a
XM_034304597.1 mRNA upstream 232721 26745018 ~ 26757243 (-) True f13a1a.1
XM_034307628.1 mRNA upstream 338413 26850710 ~ 27020775 (-) False LOC113545483
XM_026944859.2 mRNA upstream 338413 26850710 ~ 27016185 (-) False LOC113545483
XR_004578410.1 other downstream 901357 25547034 ~ 25589703 (-) False cadm4
XR_004578411.1 other downstream 901357 25547057 ~ 25589703 (-) False cadm4
TU16925 other downstream 1086754 25400756 ~ 25404306 (-) False G14258
trnar-ccu other upstream 1733045 28245342 ~ 28245414 (-) True trnar-ccu
trnam-cau other upstream 1733593 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu_1 other upstream 1738759 28251056 ~ 28251128 (-) True trnar-ccu_1
trnar-ccu_2 other upstream 1743198 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_3 other upstream 1743948 28256245 ~ 28256317 (-) True trnar-ccu_3

Expression Profile