RNA id: XM_026944784.2


Basic Information

Item Value
RNA id XM_026944784.2
length 2935
RNA type mRNA
GC content 0.42
exon number 2
gene id agtr1b
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 28851361 ~ 28866487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGTGATAGAGCACAGACGCTGCTAAAAGAGAGCATGGCTTGTTTGTTAGTACATCATGAGCACTCATGTTTCTACATTTCACAAGCTAGTTTGGGATTACGACAGACAGATGAGACTGAGACGGTGAGGCCTCGGAACTGTGGTAGAAAAGTGATCAGCCAGACGCACCCCATGGACGCAGCACCCAGTTTGCAAACGTAGGCTCTTACAACCTTTGAAACCATAAAACCATAAACACAGAAATGGAAAACCTAACGGCGGACTCAAACGAGGCTTTGCCACTAAAATGCAACATGACCGGCAGCCACAAATTCATCTTCACCTTTGTACCAGTCGTCTACGCTTTCAACTTCGTAATTGGGATGGTGGGTAACAGCATGGTGGTGACTGTGATCTACCGCTACATGAAGCTGAAGACTGTAGCCAACGTGTTTGTACTCAATTTGGCTGTATCAGATCTCACCTTCCTTGTCACTCTGCCCATGTGGGCCACGTTCACTGCCTTGGGCTACCACTGGCCATTTGGAAGTTTCCTATGCAAGGCCAGCGCAGGCCTGGTTATCTTCAACCTCTACACCAGTATATTCTTCCTGACGGCGCTCAGTGTGGATCGATACTTGGCCATCGTTCACCCAATGGGCTCCCGGCAGCGGCGTACGCTGCTCTATGCCCGAATTACCTGCGTGCTAGTGTGGGTATTTGCCTTTGTTCTGAGCATGCCTACTGCTCTAAGCAGGGACATCTACAGGGTCAAGGATCATCCCTCCACACTCTGTGGAATCTTGCAAAGTAACAAGCAGATGCATCTTCTGGTGTCTCTCAGCATCCTTAAGAGTGTTCTAGGGTTTCTTGTGcccttcctcatcatcatcacctgtGATTGCCTGATGGGTTGCGCCCTGCTGAAAGCCAAAGGTTTGCTGAGGAAGAGTGCACGTTCTCGGGAAGACGAGACTCTGCGTATGTTAGCTGCCGCTGTCCTGGCCTTCTTCGTATGCTGGGCTCCTCACCAGCTCTTCCACTTCATGGAGCTTCTGGCAATGCTGGGGGTGGTGAAAGACTGCCATGTTCTGGATGTCATTGACACGGCCATGCCCTTCAGCATATGCCTGGCTTACTTTAACAGTTGCGTCAACCCCATTCTCTATGGCTTCGTGGGCCACAACTTTCGCAAGAACCTCCTGAGGCTGCTGCACTGTGAGTCAAGTCCTGTTATGAGAAACTCCAGTATCAGCACCAAGATGACTGCTCTGTCCACCAGAGCTTCTCAAGTGCTACGTCTGTCTAGTAAGAAAGATTCTGAGTATAATTCTAACACAGTGGAAGAGCCAAAGACCTAGCACAATCAGACCACTGGGAAGATCATCTTTCTTGTTTCATCTCAATTGCATTTGGAAGGTCTTTGAGTTCAAAGTTCATCAAACTATTAAGACATATTTTAGCATAAAAGTTACAAGAAAACTGTAACTGATTCATTTCAATTGAAGTGTAGGTTTTTCCATCCCGCTTCAATACAGAAATGAGAAACAGTCAGGAACATGCCTTGGGGAACGAATGGAAGTCTTTATTGAACGTTAATAGTATTACACTGTGGGCCAAATGTACTGAGTTGTTTGTGCCTGGTTTTAGGTGTCCATGTTCTGCAGCAAAACTTTGCTAGTTATATATGAAACTGGAGTATGAGTCTCTTCATGCACTTTTAAGCACCATGCACACTGGCAAAGTGCTTTCAAAGTGCTTTTCTCTCATATacattcatgcaaaaaaaattgtgagaaaTGGAAAATGGTTCGATGTACTATGCTTTGGGCAGTTATCAGAGGCcagttttgtgtgtgatttttccaAAACCAGGTGTAAATTAGGGCAATGCTAATGGGCAATACCCAGTGTTGCCAGGTGCATGGTTTTCCTGCAAGACTGAACTGCCAGTATATGtaacaaattattaaataatacgACATTTAGGATCACATGGGAtcctggtggaaaaaaaaaaaaattagggaaAGTAGACTTTTCCATAAAGCTTGCCTATTGCGACTCTTTTATcatatctggcaaccctggtcaCAGCACATAAGTCGCACACATCAGGTTTCCTAAGAAATTCAAGACATTAAACAGGGCTTTGATGACATATCCACCTTTCTAAATGTTATGACAttctaaatgttattttatgacATCTTCACCTTTCTATATGTAGGTGCGGTTGCCTGCAAGAAAAAAGGATTACAGTTTAATTACACACTTATATGAAGTTTATTCTGTTTGCAGCATGATGAGCTACAGCTTTAATTAATTGAACATTAATTTCAACATCCCTTTTTTTTGACTTGAGCTCATCTAGCTCACTCCAGTCATACTCATAACCTCTTACACATTCCTTGAACTGTGTTCATAACAACACTGTTTTTATAACAACGGAGATAGTTAAGACCAGATAAAGATAAACGATAAAAGACGTAAGAACCTAAAATCACCTAAATGAACCTTCCTGCACTCTCTAACACGTACATTAAAAGAACTGTCATGCATTCCAGTAGATTCTGTTCTATTTTTAATGCAAGGTTAGGCATATACTGCCAAATGCCACTCTATCAGTGTTATTACTAATCAAATTTGGCAAGCCTGTTGGGAAAATTAATGTTTGCAACATCCAAAGACTATTTCACGTTCTAGATATGTAAGCAAGCAGTCGCCTAGGGCAACTTCTCAAACGATTTACAGTCATGGACCGCTTTTACAAACAAACTATTCAAAATATTTAGACACATTATTTAAAAGGgtacaataatatttaagaGCCAGAGAGTTTAAATTTCCACCCATATGTCCCAATTTGATCAAAATTATCACTAAATTCTATTGGACATGATTCATAGGCATAATAAGGTTCACAATTGTGGGttgtggttgaaaaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019229 regulation of vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004945 angiotensin type II receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18806 lncRNA downstream 398261 28436831 ~ 28453100 (-) True LOC113545501
XR_003404618.2 lncRNA downstream 398261 28437861 ~ 28453100 (-) False LOC113545501
XR_004579059.1 lncRNA downstream 416819 28417116 ~ 28434542 (-) True LOC117598396
TU18723 lncRNA downstream 644761 28206157 ~ 28206600 (-) True G15852
TU18720 lncRNA downstream 674515 28175684 ~ 28176846 (-) True G15849
TU19130 lncRNA upstream 160414 29021637 ~ 29021844 (-) True G16228
TU19203 lncRNA upstream 348184 29209407 ~ 29212056 (-) True G16291
TU19299 lncRNA upstream 686987 29548210 ~ 29604197 (-) False dipk2ab
TU19490 lncRNA upstream 936530 29797753 ~ 29798971 (-) False pcolce2b
TU19515 lncRNA upstream 1012384 29873607 ~ 29953285 (-) True G16566
XM_026944782.2 mRNA downstream 3379 28836332 ~ 28847982 (-) True cpb1
XM_026944829.2 mRNA downstream 17896 28807495 ~ 28833465 (-) True gyg1b
XM_026944773.2 mRNA downstream 48135 28791862 ~ 28803226 (-) True bdh1
XM_034303137.1 mRNA downstream 214969 28601038 ~ 28636392 (-) False wdr37
XM_034306194.1 mRNA upstream 164768 29025991 ~ 29029485 (-) True zic1
XM_026944791.2 mRNA upstream 165772 29026995 ~ 29033884 (-) False zic1
XM_026944854.2 mRNA upstream 686943 29548166 ~ 29604238 (-) True dipk2ab
XM_026944711.2 mRNA upstream 889860 29751083 ~ 29754081 (-) True chst2b
XM_026944815.2 mRNA upstream 937566 29798789 ~ 29814814 (-) True pcolce2b
trnar-ccu_3 other downstream 595044 28256245 ~ 28256317 (-) True trnar-ccu_3
trnar-ccu_2 other downstream 595794 28255495 ~ 28255567 (-) True trnar-ccu_2
trnar-ccu_1 other downstream 600233 28251056 ~ 28251128 (-) True trnar-ccu_1
trnam-cau other downstream 605400 28245890 ~ 28245961 (-) True trnam-cau
trnar-ccu other downstream 605947 28245342 ~ 28245414 (-) True trnar-ccu
trnaf-gaa other upstream 1127995 29989218 ~ 29989290 (-) True trnaf-gaa
trnah-gug other upstream 1771843 30633066 ~ 30633137 (-) True trnah-gug
TU19913 other upstream 1779475 30640698 ~ 30642974 (-) True G16900
LOC117595698 other upstream 1924740 30785963 ~ 30789410 (-) True LOC117595698
TU20271 other upstream 2131846 30993069 ~ 30997169 (-) False telo2

Expression Profile